PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011075421.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family E2F/DP
Protein Properties Length: 362aa    MW: 39554.9 Da    PI: 6.5232
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011075421.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.11.3e-27106188271
         E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  XP_011075421.1 106 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpnnnlaspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 188
                     689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094044.6E-1343362IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.106.5E-47101193IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.1E-36105188IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.3E-25107188IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467856.94E-22108189IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144588.26E-45193296IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440744.97E-42194303No hitNo description
SMARTSM011381.1E-69195360IPR014889Transcription factor DP, C-terminal
PfamPF087811.5E-41196318IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MVNHSNDNNN SNQEDGDKNP STVSKGGGGG ATRSWGTTIS GQSMSTSGSM GSPSSRSEAA  60
MATPASDSTF VRLNNLDIQG DDAGSQGPAG NRKKKRGQRA VGGDKSGRGL RQFSMKVCEK  120
VESKGRTTYN EVADELVAEF ADPNNNLASP DQQQYDEKNI RRRVYDALNV LMAMDIISKD  180
KKEIQWKGLP RTSLNDIEEL KTERLGLRSR IEKKAAYLEE LEEQYVGLQN LIQRNEQLYG  240
SGNAPSGGVA LPFILVQTRP HATVEVEISE DMQLVHFDFN STPFELHDDN YVLKAMKCCE  300
KPQVDGAGTS QDLRTTDGGE SSSMAHAYQP QIPHPSRPNI SGRPPTSPPL PGILKARVKH  360
EH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B7e-4199193193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011075421.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075421.10.0transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-169DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2G9FZK60.0A0A2G9FZK6_9LAMI; E2F-like protein
STRINGXP_010241817.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62652435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-144Transcription factor DP