PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011075213.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ERF
Protein Properties Length: 288aa    MW: 32602.3 Da    PI: 5.9997
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011075213.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.2e-202978255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y+GVr++  +g+WvAeIr+p   +kr+r +lg+f taeeAa a+++a+++l+g
  XP_011075213.1 29 EYRGVRQRT-WGKWVAEIREP---NKRTRLWLGSFATAEEAAMAYDEAARRLYG 78
                    69****999.**********9...337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.89E-312888No hitNo description
SMARTSM003804.1E-352992IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-302987IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-212987IPR016177DNA-binding domain
PfamPF008477.0E-142978IPR001471AP2/ERF domain
PROSITE profilePS5103222.4182986IPR001471AP2/ERF domain
PRINTSPR003672.3E-103041IPR001471AP2/ERF domain
PRINTSPR003672.3E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MENCRRSPLK PWKKGPARGK GGPQNAMCEY RGVRQRTWGK WVAEIREPNK RTRLWLGSFA  60
TAEEAAMAYD EAARRLYGPE AYLNLPHLRS TFNPLNKSHK FKWFPSNNVV SMFPSTGLLN  120
LNAQPSVRVI HQRLQELKKT GVLGQDSSSS SSSSDPKTDM HNVREQPQLE IPEANEKEST  180
EFSSENKVIT SEEKPQLDLN EFLQQMGVLK RDDKPSSSHD MSKSFTEIES LSFKDDEDGF  240
GNLAEKNFNW DTLSEIAGAD MTLGAEASTF NAHDSNEELI FPPSIWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-173086360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011075213.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075213.10.0dehydration-responsive element-binding protein 2F
SwissprotQ9SVX54e-84DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A2G9HGL61e-165A0A2G9HGL6_9LAMI; Uncharacterized protein
STRINGMigut.J01780.1.p1e-157(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70982329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.11e-73ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]