PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011075186.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

bHLH

Protein Properties

Length: 339aa MW: 37504.3 Da PI: 7.0373

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011075186.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28	3.9e-09	182	229	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a++L + +++++ Lq XP_011075186.1 182 SHSLAERARREKINARMKLLQELVPGC----NKISGTAMVLDEIINHVQALQ 229 8***********************9....89999***********998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.53E-15	176	247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.07E-9	176	233	No hit	No description
PROSITE profile	PS50888	14.5	178	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.9E-15	178	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-6	182	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-8	184	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MEPKAEATQP HFRSGEMGFG LDEIHSLISG PPETGRNSFT ALLELPPPQA VQLLVKEDFP 60 AKHLPPPIFP SNIGLIDRAS KRSFFASADN PPASNTILLA SSSMKVEIVK QEPTDSQPHP 120 NSASPAVSDQ SPKSGKRKER EKKVKESNKK SKKVVANEAS EDGGKKLPYV HVRARRGQAT 180 DSHSLAERAR REKINARMKL LQELVPGCNK ISGTAMVLDE IINHVQALQR QVEFLSMRLA 240 AVNPRIDFNL DALLAAESGS SIDNDYMGMF TPTIWPEGQI NGNRQLEYQQ LWQGDELRQP 300 GWSREEDTPN FITPETSHLS YDSSANSAPL HSSQLKMEL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011075186.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011075186.1	0.0	transcription factor bHLH48-like isoform X2
Refseq	XP_020548912.1	0.0	transcription factor bHLH48-like isoform X1
Swissprot	Q3EAI1	1e-72	BH060_ARATH; Transcription factor bHLH60
Swissprot	Q8VZ02	8e-74	BH048_ARATH; Transcription factor bHLH48
TrEMBL	A0A2G9HR44	1e-178	A0A2G9HR44_9LAMI; Uncharacterized protein
STRING	Migut.K00063.1.p	1e-171	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4029	23	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	5e-80	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]