PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011075147.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | C3H | ||||||||
Protein Properties | Length: 240aa MW: 24781.2 Da PI: 10.1221 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.4 | 3.8e-06 | 36 | 59 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C f+ + C++G++C+F H XP_011075147.1 36 KSKPCTKFFSMAGCPFGENCHFLH 59 77899999999************* PP | |||||||
2 | zf-CCCH | 37.1 | 5.4e-12 | 207 | 231 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +f++ G C +GdrC+FaHg XP_011075147.1 207 FKTKLCENFSK-GSCTFGDRCHFAHG 231 69*********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.99 | 34 | 61 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.624 | 34 | 62 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.85E-6 | 35 | 60 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-6 | 36 | 59 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 3.94E-15 | 93 | 170 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 1.3E-15 | 99 | 168 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 3.7E-12 | 99 | 169 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 15.221 | 100 | 164 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 1.85E-13 | 102 | 164 | No hit | No description |
Pfam | PF00013 | 3.8E-12 | 102 | 166 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 5.2E-16 | 203 | 237 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.2E-8 | 205 | 236 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.8E-7 | 206 | 232 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.474 | 206 | 233 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-9 | 207 | 231 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MDTRKRGRAE FGVNAHGGFK KSKPEIDSLS SGIGSKSKPC TKFFSMAGCP FGENCHFLHY 60 FPGGYNAVAQ MMNLTPAIPG CFAARAEPPV PGPAGSFGAS ATAKISVDAS LAGAIIGKGG 120 VNSKQISRQT GAKLAIREHE TDPNLRNIEL EGTFEQIKQA STMVRELIVS IGSVGGPGKA 180 IGRPGGHAAP GKAIGGHGGH AAPGSNFKTK LCENFSKGSC TFGDRCHFAH GAAELRKTGI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011075147.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020549217.1 | 1e-160 | zinc finger CCCH domain-containing protein 52 isoform X1 | ||||
Swissprot | Q9FG30 | 6e-98 | C3H52_ARATH; Zinc finger CCCH domain-containing protein 52 | ||||
TrEMBL | A0A2P5BTU0 | 1e-105 | A0A2P5BTU0_PARAD; Polyribonucleotide nucleotidyltransferase | ||||
TrEMBL | A0A2P5E633 | 1e-105 | A0A2P5E633_TREOI; Polyribonucleotide nucleotidyltransferase | ||||
STRING | XP_010520038.1 | 1e-107 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA845 | 24 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 2e-96 | C3H family protein |
Publications ? help Back to Top | |||
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