PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011075032.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | bHLH | ||||||||
Protein Properties | Length: 231aa MW: 25430.7 Da PI: 4.6179 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.4 | 4.4e-12 | 167 | 212 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +Av Y+k Lq XP_011075032.1 167 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLDEAVAYVKFLQ 212 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.583 | 161 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.27E-16 | 164 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.70E-12 | 165 | 216 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.5E-16 | 166 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.9E-9 | 167 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.1E-13 | 167 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MIVVVNVCLV EAATWLEALL ESDDDQSEVV LDIPKPPPSA APSDLDLDFL EPTSAAGLTN 60 FLRQNSSPAE FLSLLNDSDG YFSNLGIPAT YDYVSSSSPK RAREAEDLDK LSPKLSSSSS 120 TPLKGEKDGQ LQGGIGGSLD AEMEKLLGDS VMCRVRAKRG CATHPRSIAE RVRRTRISDR 180 IRKLQELVPN MDKQTNTADM LDEAVAYVKF LQKQIQELTE HQRNCKCIMN D |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00181 | DAP | Transfer from AT1G35460 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011075032.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011075032.1 | 1e-170 | transcription factor bHLH80 | ||||
Swissprot | Q9C8P8 | 8e-68 | BH080_ARATH; Transcription factor bHLH80 | ||||
TrEMBL | A0A2G9GUA7 | 1e-106 | A0A2G9GUA7_9LAMI; Uncharacterized protein | ||||
STRING | Migut.N03367.1.p | 6e-96 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11787 | 19 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35460.1 | 1e-57 | bHLH family protein |