PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011074956.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB | ||||||||
Protein Properties | Length: 263aa MW: 29289.7 Da PI: 6.976 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.4 | 1.4e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde+l+++++ +G g+W++ ++ g+ R++k+c++rw +yl XP_011074956.1 14 KGAWSKEEDERLINYIRAHGEGNWRSLPKAAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 56 | 9.2e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEde++++++ +lG++ W++Ia ++ gRt++++k++w+++ XP_011074956.1 67 RGNFTPEEDEIIIKLHSLLGNK-WSLIAGRLA-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.797 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.99E-30 | 13 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.5E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-24 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.64E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 28.461 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 4.9E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-28 | 69 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.04E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWSKE EDERLINYIR AHGEGNWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TPEEDEIIIK LHSLLGNKWS LIAGRLAGRT DNEIKNYWNT HIKRKLINSG 120 IDPQTHRPLN SNAAASPNIT CSDLRNSTPP LSNDNTSTIS TNHQVPGLKS NLIPATDTSS 180 STLLDNAKCN SSSSTTEEEE EESHLHPPPP QKEDELDLEL SIGLPFQSNY KYMISESGGF 240 EKNGLCSDCQ SCKVMANYTH VAD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-27 | 14 | 116 | 7 | 108 | B-MYB |
1h8a_C | 2e-27 | 13 | 116 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011074956.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011074956.1 | 0.0 | myb-related protein 330 | ||||
Swissprot | P81395 | 8e-93 | MYB30_ANTMA; Myb-related protein 330 | ||||
TrEMBL | A0A2G9GK16 | 4e-99 | A0A2G9GK16_9LAMI; Transcription factor, Myb superfamily | ||||
STRING | XP_010104477.1 | 1e-97 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 6e-87 | myb domain protein 4 |
Publications ? help Back to Top | |||
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