PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011074956.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 263aa    MW: 29289.7 Da    PI: 6.976
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011074956.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEde+l+++++ +G g+W++ ++  g+ R++k+c++rw +yl
   XP_011074956.1 14 KGAWSKEEDERLINYIRAHGEGNWRSLPKAAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP

2Myb_DNA-binding569.2e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T+eEde++++++ +lG++ W++Ia ++  gRt++++k++w+++
   XP_011074956.1  67 RGNFTPEEDEIIIKLHSLLGNK-WSLIAGRLA-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.797961IPR017930Myb domain
SuperFamilySSF466895.99E-3013108IPR009057Homeodomain-like
SMARTSM007178.5E-141363IPR001005SANT/Myb domain
PfamPF002491.0E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-241568IPR009057Homeodomain-like
CDDcd001671.64E-111661No hitNo description
PROSITE profilePS5129428.46162116IPR017930Myb domain
SMARTSM007174.9E-1766114IPR001005SANT/Myb domain
PfamPF002491.0E-1567111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-2869117IPR009057Homeodomain-like
CDDcd001671.04E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWSKE EDERLINYIR AHGEGNWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TPEEDEIIIK LHSLLGNKWS LIAGRLAGRT DNEIKNYWNT HIKRKLINSG  120
IDPQTHRPLN SNAAASPNIT CSDLRNSTPP LSNDNTSTIS TNHQVPGLKS NLIPATDTSS  180
STLLDNAKCN SSSSTTEEEE EESHLHPPPP QKEDELDLEL SIGLPFQSNY KYMISESGGF  240
EKNGLCSDCQ SCKVMANYTH VAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27141167108B-MYB
1h8a_C2e-271311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011074956.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074956.10.0myb-related protein 330
SwissprotP813958e-93MYB30_ANTMA; Myb-related protein 330
TrEMBLA0A2G9GK164e-99A0A2G9GK16_9LAMI; Transcription factor, Myb superfamily
STRINGXP_010104477.11e-97(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.16e-87myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]