PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011074920.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GRAS
Protein Properties Length: 455aa    MW: 52279.7 Da    PI: 7.3804
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011074920.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS300.64e-92804521373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl  A+ +++++ + a + L++l +++  +gd++qR+aayf+ +L arl+   s  y+ +   +t+    +ee+ a++ +++vsP+ +f+h
  XP_011074920.1  80 LIHLLLISATSINENNISSAVENLCELYQNVCLTGDSVQRVAAYFADGLMARLLTRNSPFYDMIMKDPTP----DEEFLAFTELYKVSPLNQFAH 170
                     689****************************************************9*****999888887....788999999************ PP

            GRAS  96 ltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlv 182
                     +taNqaIlea e+e     +++H+iDfdis+G+QWp+L+q+L++ +   +   l+iTg+g+    s eel+et++rL +fA+ + ++ fef+ l 
  XP_011074920.1 171 FTANQAILEAYEKEentnnRALHVIDFDISYGFQWPSLMQSLSDNAtpTNRVLLKITGLGR----SLEELQETKSRLVSFAKGFrNIVFEFHGL- 260
                     ************9977777788*********************88833555689*******....9****************9758*******7. PP

            GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                        l   +l + +vk+ E++aVnlv++l +l   s s   +++++Lk   sl+P vvv+veqe ++ +++Fl rf+++l+y++ +fdsl+  lp 
  XP_011074920.1 261 ---LRGSKLMKPKVKKSETVAVNLVFHLSSLN--SYS---KISDTLKYAHSLRPSVVVLVEQEGSRKTHNFLSRFMDSLHYFAGMFDSLDDYLPL 347
                     ...44455566689************999996..222...3557*************************************************** PP

            GRAS 278 eseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg.....yrve.eesgslv.lgWk 363
                     +s er ++E+ +lg+ei+ v    +++ +  r e++e+W+ r+e+ GF+ ++ s++ ++qaklll+  +   g     +rv   ++g ++ lgW+
  XP_011074920.1 348 DSAERLSIEKNILGKEIKCVMNYDKENeHSPRFEEMETWKGRMERHGFQGLRQSSNSVMQAKLLLKFRShCSGekyggFRVFqRDDGKAIsLGWQ 442
                     *****************99998765543899**********************************86554444334448886355777778**** PP

            GRAS 364 drpLvsvSaW 373
                     dr L+++S+W
  XP_011074920.1 443 DRFLITASSW 452
                     ********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.12754425IPR005202Transcription factor GRAS
PfamPF035141.4E-8980452IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MEVIDDDEEF LSLSLALVKD ADFERKRKRK RKVTPNRCDL SESCEEGKIF SLLQMREKML  60
KLDHNRKRAA DHEDGKGLHL IHLLLISATS INENNISSAV ENLCELYQNV CLTGDSVQRV  120
AAYFADGLMA RLLTRNSPFY DMIMKDPTPD EEFLAFTELY KVSPLNQFAH FTANQAILEA  180
YEKEENTNNR ALHVIDFDIS YGFQWPSLMQ SLSDNATPTN RVLLKITGLG RSLEELQETK  240
SRLVSFAKGF RNIVFEFHGL LRGSKLMKPK VKKSETVAVN LVFHLSSLNS YSKISDTLKY  300
AHSLRPSVVV LVEQEGSRKT HNFLSRFMDS LHYFAGMFDS LDDYLPLDSA ERLSIEKNIL  360
GKEIKCVMNY DKENEHSPRF EEMETWKGRM ERHGFQGLRQ SSNSVMQAKL LLKFRSHCSG  420
EKYGGFRVFQ RDDGKAISLG WQDRFLITAS SWCCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-558845227378Protein SCARECROW
5b3h_A1e-558845226377Protein SCARECROW
5b3h_D1e-558845226377Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12531KRKRKRK
22631RKRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011074920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074920.10.0protein SCARECROW-like
TrEMBLA0A022QBU40.0A0A022QBU4_ERYGU; Uncharacterized protein
STRINGMigut.N03341.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA123541823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.12e-55GRAS family protein