PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011074860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | ERF | ||||||||
Protein Properties | Length: 237aa MW: 26029.9 Da PI: 5.3123 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.9 | 1e-17 | 23 | 72 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr ++ +g+Wv+eIr p ++++r++lg++ t+e Aa+a++aa +l+g XP_011074860.1 23 KYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTPEAAARAYDAALVCLKG 72 8*****998.**********9...336*********************999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 6.2E-34 | 23 | 86 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-10 | 23 | 71 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-19 | 23 | 81 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-29 | 23 | 80 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.43 | 23 | 80 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.33E-19 | 23 | 81 | No hit | No description |
PRINTS | PR00367 | 1.6E-8 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-8 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MVKAENKRIP SSTKTNSSQC KNKYKGVRMR SWGSWVSEIR APNQKTRIWL GSYSTPEAAA 60 RAYDAALVCL KGSSANLNFP IPAAKTPQQQ YLNPDSCILS PKSIQRVAAA AAANASFLEN 120 NLSPQSPSTL LSPSSSLSTS SSSSSLEYSN SSPSLSSSSS PPNPTSMSFR IDDDLISLAA 180 TPGDEYDSPQ FDQVMASWYN FESPKYTEMI NGMFFDPVMM EEYSYEDHSD IRLWSFC |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011074860.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ228457 | 2e-59 | FJ228457.1 Glycine max AP2 domain-containing transcription factor 5 (AP2-5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011074860.1 | 1e-173 | ethylene-responsive transcription factor ERF014 | ||||
TrEMBL | A0A2G9GNX2 | 3e-65 | A0A2G9GNX2_9LAMI; Uncharacterized protein | ||||
STRING | Migut.N03295.1.p | 8e-58 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6177 | 24 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21910.1 | 3e-38 | ERF family protein |