PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011074673.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

C2H2

Protein Properties

Length: 436aa MW: 47444.7 Da PI: 9.8593

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011074673.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	2.9e-05	201	223	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 Cp Cg++F+ ++L++H+ H XP_011074673.1 201 ACPECGEVFPKIESLEHHQAIrH 223 6******************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	200	223	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.016	200	228	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.53E-22	225	432	No hit	No description
Gene3D	G3DSA:3.90.228.10	4.5E-11	226	432	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MRERSTSNKS SAPPLPAFFV FHLLASLIFM ALLTFLPADP NNNNSNSHDS KSKKSKKKQQ 60 QTKQKQPSSS SWDQIKNLLT CKQVQDSKIH DPSKTHTLFH SSSCSSICTF RDVVHANTRV 120 VHRSADNSPE GSTVGQDTNR LLTKKTTHAS SSSRSIHSSS SVRSTAGAGR GMQLRKLSGC 180 YECHAIVDPA RYPLGRSSIC ACPECGEVFP KIESLEHHQA IRHAVSELGP EDSSRNIVEI 240 IFKSSWLKKD NPICKIERIL KVHNTRRTIQ RFEDYRDAVK IRANSSAKRN ARCAADGNEL 300 LRFHAATLTC SLGARGSSSL CGSIPACGVC TIIRHGFQGS KISGVRTTAS SGRAHDCLGG 360 SGTRRAMLVC RVIAGRVKRV AEDSAADEDG NAAPAAGSYD SLASYAGVYS NLEELYVFSS 420 RAILPCFVVI YKALES

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MRERSTSNKS SAPPLPAFFV FHLLASLIFM ALLTFLPADP NNNNSNSHDS KSKKSKKKQQ  60
QTKQKQPSSS SWDQIKNLLT CKQVQDSKIH DPSKTHTLFH SSSCSSICTF RDVVHANTRV  120
VHRSADNSPE GSTVGQDTNR LLTKKTTHAS SSSRSIHSSS SVRSTAGAGR GMQLRKLSGC  180
YECHAIVDPA RYPLGRSSIC ACPECGEVFP KIESLEHHQA IRHAVSELGP EDSSRNIVEI  240
IFKSSWLKKD NPICKIERIL KVHNTRRTIQ RFEDYRDAVK IRANSSAKRN ARCAADGNEL  300
LRFHAATLTC SLGARGSSSL CGSIPACGVC TIIRHGFQGS KISGVRTTAS SGRAHDCLGG  360
SGTRRAMLVC RVIAGRVKRV AEDSAADEDG NAAPAAGSYD SLASYAGVYS NLEELYVFSS  420
RAILPCFVVI YKALES

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011074673.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011074673.1	0.0	uncharacterized protein LOC105159339 isoform X2
TrEMBL	A0A2G9GUH1	0.0	A0A2G9GUH1_9LAMI; Uncharacterized protein
STRING	Migut.C00823.1.p	0.0	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-153	C2H2-like zinc finger protein