PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_011074633.1 | ||||||||
Common Name | AP3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 234aa MW: 27095.8 Da PI: 9.8932 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.8 | 6.9e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien++nrqvt+skRrng++KKA+EL vLCda+v+++++sst+kl+ey+s XP_011074633.1 9 KKIENQTNRQVTYSKRRNGLFKKAHELTVLCDAKVSILMISSTQKLHEYIS 59 68***********************************************86 PP | |||||||
2 | K-box | 93.9 | 2.6e-31 | 71 | 169 | 1 | 99 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 yq++ +++l+++++e++qq+l+kLk+ ++nL+re+R+++Ge+L++L + e+ +L +++++sl+ iR++K++++ +qi++++kk ++++e++++L XP_011074633.1 71 YQTAATVDLWNSHYEKMQQHLKKLKEVNRNLRREIRQRMGESLNDLGYGEMVNLIEDMDNSLRLIRDRKYKVIGNQIDTSKKKLRNVEEIHRNLA 165 78888999**************************************************************************************8 PP K-box 96 kkle 99 +++ XP_011074633.1 166 LEFD 169 8775 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.4E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.838 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.65E-36 | 2 | 80 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.28E-34 | 3 | 96 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.5E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.2E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.5E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.5E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.5E-18 | 82 | 167 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.241 | 84 | 174 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 234 aa Download sequence Send to blast |
MARGKIQIKK IENQTNRQVT YSKRRNGLFK KAHELTVLCD AKVSILMISS TQKLHEYISP 60 TITTKQLFDQ YQTAATVDLW NSHYEKMQQH LKKLKEVNRN LRREIRQRMG ESLNDLGYGE 120 MVNLIEDMDN SLRLIRDRKY KVIGNQIDTS KKKLRNVEEI HRNLALEFDA RQEDPQYGLV 180 ENEGDYNSVL GFPNGGPRII ALRLPPNHHP HHHHHPTLHS GGGASDLTTF ALLE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-15 | 1 | 59 | 1 | 59 | MEF2C |
5f28_B | 2e-15 | 1 | 59 | 1 | 59 | MEF2C |
5f28_C | 2e-15 | 1 | 59 | 1 | 59 | MEF2C |
5f28_D | 2e-15 | 1 | 59 | 1 | 59 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo). |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00077 | ChIP-seq | Transfer from AT3G54340 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_011074633.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KM190075 | 0.0 | KM190075.1 Sesamum indicum cultivar Rajeswari APETALA 3 (AP3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001306615.1 | 1e-175 | floral homeotic protein DEFICIENS | ||||
Swissprot | P23706 | 1e-149 | DEFA_ANTMA; Floral homeotic protein DEFICIENS | ||||
TrEMBL | A0A097CK53 | 1e-174 | A0A097CK53_SESIN; APETALA 3 | ||||
STRING | XP_009794650.1 | 1e-135 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2314 | 24 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G54340.1 | 1e-92 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 105159317 |
Publications ? help Back to Top | |||
---|---|---|---|
|