PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011073942.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | HSF | ||||||||
Protein Properties | Length: 266aa MW: 28690 Da PI: 5.4968 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 72.7 | 6.7e-23 | 3 | 63 | 33 | 102 |
HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 33 eeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102 ++efa+++LpkyFkh+nf+SFvRQLn+YgF+kv ++ weF+++ F++g+k ll++i+r+k XP_011073942.1 3 PKEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDCFRRGEKALLRDIQRRKI 63 589********************************99.........*********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.4E-22 | 3 | 61 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.63E-19 | 3 | 61 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.4E-19 | 3 | 61 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SMART | SM00415 | 1.3E-21 | 3 | 61 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.0E-10 | 10 | 22 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 11 | 35 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.0E-10 | 23 | 35 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
LLPKEFARDL LPKYFKHNNF SSFVRQLNTY GFRKVVPDRW EFANDCFRRG EKALLRDIQR 60 RKISSSATPV AAAGTTAVAA NTQAAVSVVA LPPAVPVQIS PANSGDEQVL SSNSSPAAAG 120 ATTPMAVRSS TSAPEILEEN DRLRRENSQL SEELNRLRSL CGNIYNIMSN YAANQGDAST 180 GVLPEGGAMN LIQVMEGEEC GGGGKAEEEG ERWPKIFGVS IGAKRLKKNE EVEGEDQGQA 240 VGANAKSEPS ESGSNKNHDP QWLDKL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 6e-17 | 5 | 66 | 53 | 125 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011073942.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011073942.1 | 0.0 | heat stress transcription factor B-2b-like, partial | ||||
Swissprot | Q9T0D3 | 3e-64 | HFB2B_ARATH; Heat stress transcription factor B-2b | ||||
TrEMBL | A0A2G9H086 | 1e-108 | A0A2G9H086_9LAMI; Uncharacterized protein | ||||
STRING | Migut.A00803.1.p | 3e-94 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2182 | 24 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11660.1 | 4e-61 | HSF family protein |
Publications ? help Back to Top | |||
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