PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011073901.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | FAR1 | ||||||||
Protein Properties | Length: 231aa MW: 26604.4 Da PI: 9.4123 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 64.3 | 3.4e-20 | 65 | 150 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y+eYA ++GF +r+ +s+ks+r+g+ ++r + C + + +++ + +++tr++ r gC+a+l vkke+ g+w v k++ +HnH+l+ XP_011073901.1 65 YYEEYAGRAGFLTRVLSSRKSERDGSLISRGLGCRNILHVQKSGSL---SNETREKRRDGCTAMLLVKKESAGRWIVRKFVRDHNHPLV 150 8*********************************999888888776...8899999*******************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.3E-18 | 65 | 150 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MTKCHDWADV MQHFLPVDVE DRLDGGGKEM IEASVMADLT SCEVDRKGEP YEGMIFETEA 60 AARAYYEEYA GRAGFLTRVL SSRKSERDGS LISRGLGCRN ILHVQKSGSL SNETREKRRD 120 GCTAMLLVKK ESAGRWIVRK FVRDHNHPLV VSLPKRRPTF DEKDKRIQEL TAELRVKKRL 180 SSAYREQLLI LMKDVENHND HLTSKVQIIR NNLKELEARR QELLNHNKPS S |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011073901.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011073899.1 | 1e-172 | protein FAR-RED IMPAIRED RESPONSE 1 isoform X1 | ||||
Refseq | XP_011073901.1 | 1e-172 | protein FAR-RED IMPAIRED RESPONSE 1 isoform X1 | ||||
Refseq | XP_020548482.1 | 1e-172 | protein FAR-RED IMPAIRED RESPONSE 1 isoform X1 | ||||
TrEMBL | A0A2G9GDY9 | 1e-129 | A0A2G9GDY9_9LAMI; Uncharacterized protein | ||||
STRING | Migut.N03107.1.p | 1e-119 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 3e-47 | FAR1 family protein |