PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011073897.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

Nin-like

Protein Properties

Length: 996aa MW: 109593 Da PI: 5.4864

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011073897.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	5.1e-29	598	649	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ XP_011073897.1 598 AEKHVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 649 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.904	588	669	IPR003035	RWP-RK domain
Pfam	PF02042	4.2E-26	602	649	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.14E-21	892	981	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.2E-23	893	975	No hit	No description
PROSITE profile	PS51745	19.48	896	969	IPR000270	PB1 domain
SMART	SM00666	1.1E-21	896	978	IPR000270	PB1 domain
CDD	cd06407	9.10E-33	897	977	No hit	No description
Pfam	PF00564	1.7E-17	899	977	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 996 aa Download sequence Send to blast
MDPFSSKEKD ADHSALPRCR MEGVAAGSTD IGVRCPNLKD PFSIAELMNF DTYAGWCNSP 60 SNLADQMFPS FALSPLTSAS TNFSPFDGLN FMHQYNSGIP MVDGDIMGGS FVNGDKVMFH 120 HMDSQLPCAA NFADDGFDLV EMRDKTSSQH NLVGEVGETV IPRPPVQSLA EKMLRALNLF 180 KEWSGGGILA QVWVPMKNGD RYILSTCEQP YLLDQTLSGY REVSRLFTFA AESKPGSFLG 240 LPGRVFASKI PEWTSNVMYY NKAEYLRVQY AVDHEVRGSI ALPVFEDDSL ERSCCAVLEL 300 VTMKEKSNFD LEMENVCRAL QAVNLRSSVP PRLYPQSLSK NQRTALAEIT DVLRAVCHAH 360 RLPLALTWIP CSQIKGLGEE GCSQSAHEKC VLCIESTACY VNDKDMKDFV HACAEHSLEE 420 GQGIVGKALQ SNHPFFYPDV KEYHISEYPL VHHARKFGLN AAVAIRLRSM YTGENDYILE 480 FFLPVNMKGS TEQQLLLNNL SSTMQRICKS LRTVSDAELQ GGESSKVQLQ DVEVRNIPAM 540 VLSRRSSEQS LTNGNLNSVD HATQNTSDST STGVEADGPN EQRMIGSRKH MEKKRSTAEK 600 HVSLSVLQQY FSGSLKDAAK SIGVCPTTLK RICRQHGISR WPSRKINKVN RSLKKIQSVL 660 DSVQGVEGGL KFDPTMGGLV AAGSIIQQFD SRTSGVLPDK DDMIRDSDLV IQNATEPSPS 720 FMDIETTIVK MEEESLLDGN QLAGEGKSNP LRLQNPEKSK LAELDAGLSW PASPNNVPWT 780 TANVAPSSFL LRERCNRSVL DHSSMKPVSS ESHFISRNSS SMAAGDEIET KLNDDTGIDG 840 DDGVVEHNQP TSSGMTDSSN GSGSGSMMNG SSSSSRSFGK RQNPKTEASH GDSGSKIIVK 900 ATYKEDTIRF KFEPAAGCIQ LYEEVAKRFK LQMGHFQLKY LDDEEEWVML VSDSDLQECL 960 EIMDFVGSRN VKFLVRDVPS TIGSSGGSNC FLGDGS

Sequence ? help Back to Top

Protein Sequence Length: 996 aa Download sequence Send to blast

MDPFSSKEKD ADHSALPRCR MEGVAAGSTD IGVRCPNLKD PFSIAELMNF DTYAGWCNSP  60
SNLADQMFPS FALSPLTSAS TNFSPFDGLN FMHQYNSGIP MVDGDIMGGS FVNGDKVMFH  120
HMDSQLPCAA NFADDGFDLV EMRDKTSSQH NLVGEVGETV IPRPPVQSLA EKMLRALNLF  180
KEWSGGGILA QVWVPMKNGD RYILSTCEQP YLLDQTLSGY REVSRLFTFA AESKPGSFLG  240
LPGRVFASKI PEWTSNVMYY NKAEYLRVQY AVDHEVRGSI ALPVFEDDSL ERSCCAVLEL  300
VTMKEKSNFD LEMENVCRAL QAVNLRSSVP PRLYPQSLSK NQRTALAEIT DVLRAVCHAH  360
RLPLALTWIP CSQIKGLGEE GCSQSAHEKC VLCIESTACY VNDKDMKDFV HACAEHSLEE  420
GQGIVGKALQ SNHPFFYPDV KEYHISEYPL VHHARKFGLN AAVAIRLRSM YTGENDYILE  480
FFLPVNMKGS TEQQLLLNNL SSTMQRICKS LRTVSDAELQ GGESSKVQLQ DVEVRNIPAM  540
VLSRRSSEQS LTNGNLNSVD HATQNTSDST STGVEADGPN EQRMIGSRKH MEKKRSTAEK  600
HVSLSVLQQY FSGSLKDAAK SIGVCPTTLK RICRQHGISR WPSRKINKVN RSLKKIQSVL  660
DSVQGVEGGL KFDPTMGGLV AAGSIIQQFD SRTSGVLPDK DDMIRDSDLV IQNATEPSPS  720
FMDIETTIVK MEEESLLDGN QLAGEGKSNP LRLQNPEKSK LAELDAGLSW PASPNNVPWT  780
TANVAPSSFL LRERCNRSVL DHSSMKPVSS ESHFISRNSS SMAAGDEIET KLNDDTGIDG  840
DDGVVEHNQP TSSGMTDSSN GSGSGSMMNG SSSSSRSFGK RQNPKTEASH GDSGSKIIVK  900
ATYKEDTIRF KFEPAAGCIQ LYEEVAKRFK LQMGHFQLKY LDDEEEWVML VSDSDLQECL  960
EIMDFVGSRN VKFLVRDVPS TIGSSGGSNC FLGDGS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011073897.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011073897.1	0.0	protein NLP9
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A2G9GDZ0	0.0	A0A2G9GDZ0_9LAMI; Uncharacterized protein
STRING	Migut.N03106.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3981	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]