PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011073852.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB | ||||||||
Protein Properties | Length: 329aa MW: 37298.9 Da PI: 7.4734 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.8 | 4.5e-17 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl XP_011073852.1 14 RGPWSPEEDAKLKSYIEKHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 39.4 | 1.4e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T++Ed l+ + G++ W+ Ia++++ gRt++++k++w++ XP_011073852.1 69 GGFTEDEDNLICSLYVSIGSR-WSIIAAHLP-GRTDNDIKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.763 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.84E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-13 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-16 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.8E-25 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.73E-10 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.966 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.19E-8 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MGRAPCCDKA NVKRGPWSPE EDAKLKSYIE KHGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPSIKHGG FTEDEDNLIC SLYVSIGSRW SIIAAHLPGR TDNDIKNYWN TRLKKKLFGR 120 QPREKQAQRV SPYPRLQEPV VPPLPTAAYS NIETGMQRAQ ASNSLTDFAI MPQLESRFSY 180 DHHPQQNREN FGNFICYTSE NEQPCKSSTI RLVPSTLTGF INSLCPPSGS DFHGISSIPT 240 NDFQAFDEIP QDITFIMPQQ LDGVDSFSEM VSTRSTTSVI SAESAVSWGD LSCHLYPSAL 300 SNYERKMQHD WESFDDHPRL QDYSENKLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-24 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011073852.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011073852.1 | 0.0 | transcription factor MYB6-like | ||||
TrEMBL | A0A2G9GJN1 | 1e-115 | A0A2G9GJN1_9LAMI; Transcription factor, Myb superfamily | ||||
STRING | VIT_00s1352g00010.t01 | 7e-96 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 4e-81 | myb domain protein 84 |