PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011073785.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

HSF

Protein Properties

Length: 483aa MW: 54014 Da PI: 6.2449

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011073785.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109.1	3.3e-34	20	110	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl k+ye+++d++++ ++sws +++sfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF+++ F k++k+ll++ XP_011073785.1 20 FLLKTYEMVDDKTTDAIVSWSGSKKSFVVWNPPEFARVLLPSYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEDFVKDQKHLLKN 105 9******************999*************************************999.........************** PP XXXXX CS HSF_DNA-bind 97 ikrkk 101 i+r+k XP_011073785.1 106 IHRRK 110 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.1E-37	16	109	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.1E-58	16	109	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	4.08E-35	16	109	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	2.5E-30	20	109	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.4E-18	20	43	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.4E-18	58	70	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	59	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.4E-18	71	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence Send to blast
MDGGISGGTA AGGGASPAPF LLKTYEMVDD KTTDAIVSWS GSKKSFVVWN PPEFARVLLP 60 SYFKHNNFSS FIRQLNTYGF RKIDPERWEF ANEDFVKDQK HLLKNIHRRK PIHSHSQPQG 120 SIDPERAAFE EEIDKLSREK TLLEGNVLGF KEQQSAAKVQ LEKLTQRIGS MEQRQERLLS 180 FLENAVQNPE FVERLSQKLE SMDFSAYSKK RRLPEANHVQ SIQDNVLVDN QSSSRPDFGS 240 MSHQDFCNKL RLELSPAVSD VNLLSHSTQS SNEDGVSPQR RIEGWSKDVH VRTAGFLCPP 300 ETLELSDTGA SLNLNMDSSL SCKVGPESPK LHSLQRSLTS NDEGDDHLSC LLNLTLASSP 360 LELNRGQNFD GMPLSSQEHC TVSRLNGSGD KVVHRASSKD RTPSDDTQTL SSSPDVHNNK 420 QGPATVQNRV NDVFWEQFLT ERPGCSDTEE ASSNFRGNPY DEQERKPVKG IARNTKGMEH 480 LTL

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence Send to blast

MDGGISGGTA AGGGASPAPF LLKTYEMVDD KTTDAIVSWS GSKKSFVVWN PPEFARVLLP  60
SYFKHNNFSS FIRQLNTYGF RKIDPERWEF ANEDFVKDQK HLLKNIHRRK PIHSHSQPQG  120
SIDPERAAFE EEIDKLSREK TLLEGNVLGF KEQQSAAKVQ LEKLTQRIGS MEQRQERLLS  180
FLENAVQNPE FVERLSQKLE SMDFSAYSKK RRLPEANHVQ SIQDNVLVDN QSSSRPDFGS  240
MSHQDFCNKL RLELSPAVSD VNLLSHSTQS SNEDGVSPQR RIEGWSKDVH VRTAGFLCPP  300
ETLELSDTGA SLNLNMDSSL SCKVGPESPK LHSLQRSLTS NDEGDDHLSC LLNLTLASSP  360
LELNRGQNFD GMPLSSQEHC TVSRLNGSGD KVVHRASSKD RTPSDDTQTL SSSPDVHNNK  420
QGPATVQNRV NDVFWEQFLT ERPGCSDTEE ASSNFRGNPY DEQERKPVKG IARNTKGMEH  480
LTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	3e-22	8	109	17	129	Heat shock factor protein 1
5d5v_B	3e-22	8	109	17	129	Heat shock factor protein 1
5d5v_D	3e-22	8	109	17	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011073785.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR869815	8e-51	KR869815.1 Vitis pseudoreticulata transcription factor HsfA5a mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011073785.1	0.0	heat stress transcription factor A-5
Swissprot	Q94BZ5	1e-151	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A2G9GT27	0.0	A0A2G9GT27_9LAMI; Heat shock transcription factor
STRING	Migut.N00424.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9461	21	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-153	HSF family protein

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]