PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011073745.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GATA
Protein Properties Length: 284aa    MW: 31084.9 Da    PI: 7.6429
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011073745.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.24.5e-18200234135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C++ kTp+WR gp g+ktLCnaCG++y++ +l
  XP_011073745.1 200 CLHCQADKTPQWRAGPMGPKTLCNACGVRYKSGRL 234
                     99*****************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.4E-17194248IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.82194230IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.13E-15196257No hitNo description
Gene3DG3DSA:3.30.50.101.9E-14197232IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.45E-13199247No hitNo description
PfamPF003208.8E-16200234IPR000679Zinc finger, GATA-type
PROSITE patternPS003440200225IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MEILDTAAEA CFMVDDDLLD FTLEEGEGEE EEEPTISKRA SASSSSLESS NPAATAFRLD  60
ARSSSFSEFV EEELEWLSNK DAFPAVETCF GILSDNPELI LNQHSPVSVL EKSSSSSNSN  120
TNSNGSAVAS CCDSFKVPTN YPVRARSKRR RRRRAGFGDL VSQHCLWSNK VSVKNKQEPS  180
FALPPLPMLA NGGAGLGRRC LHCQADKTPQ WRAGPMGPKT LCNACGVRYK SGRLLPEYRP  240
ASSPTFSSTL HSNSHRKVIE MRKQKQIPMG DGITVNVACK YRVG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145153RSKRRRRRR
2147152KRRRRR
3147153KRRRRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011073745.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0676382e-56KJ067638.1 Sesamum indicum clone TilSSR_38839 microsatellite Sesame_38839 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073745.10.0GATA transcription factor 1-like
SwissprotQ8LAU92e-48GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A2G9GS871e-111A0A2G9GS87_9LAMI; Uncharacterized protein
STRINGXP_009767386.11e-95(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40762445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.14e-43GATA transcription factor 1