PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011073726.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB | ||||||||
Protein Properties | Length: 253aa MW: 29801.4 Da PI: 8.4559 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.4 | 7.7e-19 | 23 | 70 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+++v+++G g+W+ +a+ g++R +k+c++rw +yl XP_011073726.1 23 KGPWTAEEDRLLIQYVELHGEGRWNNVAKLAGLKRNGKSCRLRWVNYL 70 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52 | 1.7e-16 | 76 | 120 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ XP_011073726.1 76 RGQITPHEERIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 120 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.005 | 18 | 74 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.21E-31 | 21 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-17 | 22 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.3E-18 | 23 | 70 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.9E-25 | 24 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.03E-12 | 25 | 70 | No hit | No description |
PROSITE profile | PS51294 | 19.616 | 75 | 125 | IPR017930 | Myb domain |
SMART | SM00717 | 6.4E-15 | 75 | 123 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-14 | 76 | 120 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-24 | 78 | 124 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.66E-10 | 80 | 121 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MSWGVMGEHM MGMWGAMEDG WRKGPWTAEE DRLLIQYVEL HGEGRWNNVA KLAGLKRNGK 60 SCRLRWVNYL RPDLKRGQIT PHEERIILEL HARWGNRWST IARSLPGRTD NEIKNYWRTH 120 FKKKTKSSSD SPEKTRARLL RRQQFHLQQQ LQQQQQQQQQ QQQQHQQDQI IDMTRIMSLL 180 DDSENRSAPG FEYPSGADEH GVLLHSMMNE YAAVAEASNE GILWDSLWNL DDLHGNYMTE 240 RANYQHNLAA TFY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-28 | 23 | 125 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011073726.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ074443 | 5e-69 | KJ074443.1 Sesamum indicum clone TilSSR_45644 microsatellite Sesame_45644 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011073726.1 | 0.0 | myb-related protein 305 | ||||
Swissprot | P81391 | 6e-52 | MYB05_ANTMA; Myb-related protein 305 | ||||
TrEMBL | A0A2G9FY60 | 1e-107 | A0A2G9FY60_9LAMI; Transcription factor, Myb superfamily | ||||
STRING | cassava4.1_013947m | 1e-105 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24310.1 | 4e-82 | myb domain protein 305 |
Publications ? help Back to Top | |||
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