PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011073670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | AP2 | ||||||||
Protein Properties | Length: 595aa MW: 66175 Da PI: 6.6305 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.3 | 6e-16 | 270 | 329 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_011073670.1 270 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEEKAARAYDLAALKYWG 329 78*******************988886678446*************************98 PP | |||||||
2 | AP2 | 46.2 | 1.1e-14 | 372 | 423 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_011073670.1 372 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 423 57****************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.21E-21 | 270 | 337 | No hit | No description |
SuperFamily | SSF54171 | 1.37E-16 | 270 | 339 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-12 | 270 | 329 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.137 | 271 | 337 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.3E-16 | 271 | 338 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.9E-29 | 271 | 343 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-6 | 272 | 283 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.51E-25 | 372 | 433 | No hit | No description |
SuperFamily | SSF54171 | 8.5E-18 | 372 | 432 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.6E-10 | 372 | 423 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-18 | 373 | 432 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-34 | 373 | 437 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.124 | 373 | 431 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-6 | 413 | 433 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 595 aa Download sequence Send to blast |
MKPTSNDSNC SQNDNWLSFS LSADRHYTQP FSSDVSLSFS SSFNCPGIYY GVDSENSGLD 60 MMPLKSDGSL CLTGAINTSH PQGMATSTPK LEDFHHYDRG GMALSLDSFY LPQNTGNQAG 120 NGQDFLSHHH ENSNHRQIVQ FQEYPNSSVT GGPDIYQALD GKAKEIDHLA EFNLRTADDE 180 IPGLGNWVSR NCPDAGKLEQ FDSVGYGDLQ SLTLSMSPGS LSSSLNGSQQ IKPAMADCIG 240 WENKKRAPGK GDQKHIVHRK SIDTFGQRTS QYRGVTRHRW TGRYEAHLWD NSCKKEGQSR 300 KGRQVYLGGY DMEEKAARAY DLAALKYWGT STHINFPLEN YQQELEDMKN MSRQEFVARL 360 RRKSSGFSRG ASIYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDVAAIK 420 FRGVNAVTNF DTSRYNVERI MESNALLSGE MARRNKDADS IHNETTSFTR PSNPSDNMDS 480 NVSKESHSDV SELGMALYHS SNFKAASSSV SVDGMITEVI VSDQHNVEET GKTVSRLLLT 540 SLNGSSADSI PVRKNSNEME FSKFFTLPTT AMNYWIPSAQ MRAEVPLFSA WADAS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011073670.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011073670.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL1 isoform X2 | ||||
Swissprot | Q38914 | 1e-145 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A2Z7DCW7 | 0.0 | A0A2Z7DCW7_9LAMI; Uncharacterized protein | ||||
STRING | XP_009769992.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-135 | AP2 family protein |