PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011073634.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 236aa MW: 26954.6 Da PI: 9.7896 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.3 | 2.1e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri+n++ rqvtfskRr g+lKKA+EL +LCdaev viifsstgklye+s+ XP_011073634.1 9 KRIDNSTSRQVTFSKRRSGLLKKAKELAILCDAEVGVIIFSSTGKLYEFSN 59 79***********************************************95 PP | |||||||
2 | K-box | 84.3 | 2.5e-28 | 82 | 171 | 10 | 99 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++ + +q+e+a L+++++ Lq+++R+l+Ge+L Ls+k+Lq+Le+qLe sl+ +R+kK++++ e+i+el +k + +++en +L kk++ XP_011073634.1 82 PGSEVKFWQREAATLRQQLQDLQENHRQLMGEELYGLSVKDLQRLENQLEMSLRGVRKKKDQMFSEEIQELSRKGNFIHQENVELYKKVK 171 567899*********************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.3E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.889 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.78E-45 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 8.24E-33 | 2 | 90 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.7E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.6E-27 | 85 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.675 | 86 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MGRGKIAIKR IDNSTSRQVT FSKRRSGLLK KAKELAILCD AEVGVIIFSS TGKLYEFSNT 60 SMKSVIERYS KTKEEHHQLL NPGSEVKFWQ REAATLRQQL QDLQENHRQL MGEELYGLSV 120 KDLQRLENQL EMSLRGVRKK KDQMFSEEIQ ELSRKGNFIH QENVELYKKV KLIEQENMEL 180 YRKAYGARDV SAANGTGFAA NYGFTVSRDV HGPIQLQLSP PAPQNSETAE TATESR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 5e-22 | 1 | 81 | 1 | 81 | MEF2C |
5f28_B | 5e-22 | 1 | 81 | 1 | 81 | MEF2C |
5f28_C | 5e-22 | 1 | 81 | 1 | 81 | MEF2C |
5f28_D | 5e-22 | 1 | 81 | 1 | 81 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011073634.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011073634.1 | 1e-176 | MADS-box transcription factor 23 isoform X2 | ||||
Swissprot | Q6EP49 | 1e-103 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | A0A2G9GQZ0 | 1e-130 | A0A2G9GQZ0_9LAMI; MADS box transcription factor | ||||
STRING | XP_010254615.1 | 1e-125 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA679 | 20 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 1e-105 | AGAMOUS-like 21 |
Publications ? help Back to Top | |||
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