PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011073634.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MIKC_MADS
Protein Properties Length: 236aa    MW: 26954.6 Da    PI: 9.7896
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011073634.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.32.1e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    kri+n++ rqvtfskRr g+lKKA+EL +LCdaev viifsstgklye+s+
  XP_011073634.1  9 KRIDNSTSRQVTFSKRRSGLLKKAKELAILCDAEVGVIIFSSTGKLYEFSN 59
                    79***********************************************95 PP

2K-box84.32.5e-28821711099
           K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                       ++ + +q+e+a L+++++ Lq+++R+l+Ge+L  Ls+k+Lq+Le+qLe sl+ +R+kK++++ e+i+el +k + +++en +L kk++
  XP_011073634.1  82 PGSEVKFWQREAATLRQQLQDLQENHRQLMGEELYGLSVKDLQRLENQLEMSLRGVRKKKDQMFSEEIQELSRKGNFIHQENVELYKKVK 171
                     567899*********************************************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.3E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.889161IPR002100Transcription factor, MADS-box
CDDcd002653.78E-45278No hitNo description
SuperFamilySSF554558.24E-33290IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.7E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-283859IPR002100Transcription factor, MADS-box
PfamPF014862.6E-2785170IPR002487Transcription factor, K-box
PROSITE profilePS5129715.67586178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGRGKIAIKR IDNSTSRQVT FSKRRSGLLK KAKELAILCD AEVGVIIFSS TGKLYEFSNT  60
SMKSVIERYS KTKEEHHQLL NPGSEVKFWQ REAATLRQQL QDLQENHRQL MGEELYGLSV  120
KDLQRLENQL EMSLRGVRKK KDQMFSEEIQ ELSRKGNFIH QENVELYKKV KLIEQENMEL  180
YRKAYGARDV SAANGTGFAA NYGFTVSRDV HGPIQLQLSP PAPQNSETAE TATESR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-22181181MEF2C
5f28_B5e-22181181MEF2C
5f28_C5e-22181181MEF2C
5f28_D5e-22181181MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011073634.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073634.11e-176MADS-box transcription factor 23 isoform X2
SwissprotQ6EP491e-103MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A2G9GQZ01e-130A0A2G9GQZ0_9LAMI; MADS box transcription factor
STRINGXP_010254615.11e-125(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6792056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.11e-105AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]