PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011073629.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB | ||||||||
Protein Properties | Length: 237aa MW: 27478.4 Da PI: 9.3238 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48 | 2.8e-15 | 11 | 58 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W +eEd ll+++++++G g W++++ + g+ R++k+c++rw++yl XP_011073629.1 11 KGTWIPEEDTLLKKCIEKYGEGKWHLVPMRAGLSRCRKSCRLRWLNYL 58 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 43.2 | 9.4e-14 | 64 | 107 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg + ++E +l+++++k+lG++ W++Ia +++ gRt++++k++w++ XP_011073629.1 64 RGQFAKDEVDLIIRLHKLLGNR-WSLIAGRLP-GRTANDVKNFWNS 107 788999****************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.749 | 6 | 62 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-20 | 8 | 60 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.13E-26 | 8 | 105 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-13 | 10 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-14 | 11 | 58 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.70E-9 | 13 | 58 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-21 | 61 | 111 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.439 | 63 | 113 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-11 | 63 | 111 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-12 | 64 | 107 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.62E-8 | 69 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MEKNISVGVR KGTWIPEEDT LLKKCIEKYG EGKWHLVPMR AGLSRCRKSC RLRWLNYLKP 60 NIKRGQFAKD EVDLIIRLHK LLGNRWSLIA GRLPGRTAND VKNFWNSQIE KTERTKLKTK 120 VEKIITTTNI LRPRPRIPSN LKVPWPRKIR ETTQSNIGPR TDHEDLENRQ RPSSEADECI 180 RWWSNLLETT NVENGMVADL EKQTGETSTG LHDRDDAFGD FNIDLDVGEL LCFGEEC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-22 | 11 | 111 | 7 | 106 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011073629.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011073629.1 | 1e-174 | transcription factor MYB114 | ||||
Swissprot | Q9FNV9 | 2e-58 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | W8EB73 | 2e-82 | W8EB73_ERYLE; Anthocyanin-activating R2R3 MYB transcription factor | ||||
STRING | Migut.L00458.1.p | 2e-78 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 7e-61 | myb domain protein 113 |
Publications ? help Back to Top | |||
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