PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011073628.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 246aa    MW: 28461.2 Da    PI: 6.7866
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011073628.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.4e-161158148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT eEd ll+++++ +G g W++++ + g++R++k+c++rw++yl
   XP_011073628.1 11 KGTWTSEEDALLKKCIEDYGEGKWHLVPIRAGLKRCRKSCRLRWLNYL 58
                     799*******************************************97 PP
2Myb_DNA-binding41.23.9e-1364106145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      r  +Tt+E +l+ +++k+lG++ W++Ia +++ gRt++++k+ w+
   XP_011073628.1  64 RSHFTTDEVDLIMRLHKLLGNR-WSLIAGRLP-GRTANDVKNLWN 106
                      6679******************.*********.*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.866662IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-20761IPR009057Homeodomain-like
SuperFamilySSF466894.03E-278105IPR009057Homeodomain-like
SMARTSM007174.2E-141060IPR001005SANT/Myb domain
PfamPF002491.2E-141158IPR001005SANT/Myb domain
CDDcd001679.62E-101358No hitNo description
Gene3DG3DSA:1.10.10.602.5E-2062111IPR009057Homeodomain-like
SMARTSM007171.4E-963111IPR001005SANT/Myb domain
PROSITE profilePS5129416.49563113IPR017930Myb domain
PfamPF002492.5E-1164106IPR001005SANT/Myb domain
CDDcd001678.19E-767106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MENNISSGVR KGTWTSEEDA LLKKCIEDYG EGKWHLVPIR AGLKRCRKSC RLRWLNYLKP  60
DIKRSHFTTD EVDLIMRLHK LLGNRWSLIA GRLPGRTAND VKNLWNGHID KTRRAKVEKI  120
ITRSNILKPR SRIPSNLKVR RPSLETRETI PPSDLVSITN EGPDEYYKQY PSSEADECIR  180
WWSNLLETTN MENVMVDDLE KQTGETSARL HDGDNVHRDN AILEGDGDEF GDLNIVDFGE  240
LMCDEW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-22111117106B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011073628.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073628.10.0transcription factor MYB114-like
SwissprotQ9FNV98e-56MY113_ARATH; Transcription factor MYB113
TrEMBLW8EB733e-71W8EB73_ERYLE; Anthocyanin-activating R2R3 MYB transcription factor
STRINGMigut.L00458.1.p3e-69(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.13e-58myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]