PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011073600.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family LFY
Protein Properties Length: 407aa    MW: 45468.4 Da    PI: 8.3135
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011073600.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY620.13.9e-1896039239386
         FLO_LFY  39 aaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkll 133
                      a ++  r+l +leelf+ayG+ry+t+akiaelGftv+tL+dm+deeld++m+sl++ifr+dllvGeryGikaavraerrrl+eee  ++rr+ll
  XP_011073600.1  60 PAYSVRPRELGGLEELFQAYGIRYFTAAKIAELGFTVNTLLDMRDEELDEMMNSLCQIFRWDLLVGERYGIKAAVRAERRRLDEEE--ARRRHLL 152
                     34445556677*************************************************************************87..99999** PP

         FLO_LFY 134 sedeetaldalsqeglseepvqeekeaagsggeglgeaelvaaeekkseeekkkaskkkqkrkkkkelkseededeeeeededeegsgedgeerq 228
                     s d+++aldalsqeglseepvq+ekeaagsgg+g   +e+v+a+        +k++++k+ + ++++   + d  +e+e  ed+e+ g +g+erq
  XP_011073600.1 153 SGDTTHALDALSQEGLSEEPVQQEKEAAGSGGGG--VWEMVVAAG------GRKQRRRKNYKGRSRM---AXD--DEKEGAEDDENCGGGGSERQ 234
                     ******************************9999..899998873......2333111222222222...233..3444555667788889**** PP

         FLO_LFY 229 rehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalr 323
                     rehPfivtepgevargkknGLDYLf+LyeqCrefL+qvq+iakerGekcPtkvtnqvfryakkaga+yinkPkmrhYvhCYalhcLdee+snalr
  XP_011073600.1 235 REHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQSIAKERGEKCPTKVTNQVFRYAKKAGANYINKPKMRHYVHCYALHCLDEETSNALR 329
                     *********************************************************************************************** PP

         FLO_LFY 324 rafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChlerskas 386
                     rafkergenvGawrqacykplvaiaarqgwdida+fnahp+LsiWYvPtkLrqLCh+ers+a+
  XP_011073600.1 330 RAFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPHLSIWYVPTKLRQLCHAERSSAA 392
                     ************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016981.3E-19949392IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MVGNLEEALV KVLASRCGSN RLAMRKQSFD AAIAVVALQR LVIANGLREA VAPPPPPPPP  60
AYSVRPRELG GLEELFQAYG IRYFTAAKIA ELGFTVNTLL DMRDEELDEM MNSLCQIFRW  120
DLLVGERYGI KAAVRAERRR LDEEEARRRH LLSGDTTHAL DALSQEGLSE EPVQQEKEAA  180
GSGGGGVWEM VVAAGGRKQR RRKNYKGRSR MAXDDEKEGA EDDENCGGGG SERQREHPFI  240
VTEPGEVARG KKNGLDYLFH LYEQCREFLI QVQSIAKERG EKCPTKVTNQ VFRYAKKAGA  300
NYINKPKMRH YVHCYALHCL DEETSNALRR AFKERGENVG AWRQACYKPL VAIAARQGWD  360
IDAIFNAHPH LSIWYVPTKL RQLCHAERSS AAASSSITGG GADHLPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-1092304012173PROTEIN LEAFY
2vy2_A1e-1092304012173PROTEIN LEAFY
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for flower development. FLO may interact in a sequential manner with other homeotic genes affecting floral organ identity.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011073600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5240340.0AY524034.1 Paulownia tomentosa floricaula (FLO) mRNA, FLOA paralog, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073600.20.0LOW QUALITY PROTEIN: floricaula protein
SwissprotP239150.0FLO_ANTMA; Floricaula protein
TrEMBLA0A2G9GA060.0A0A2G9GA06_9LAMI; Uncharacterized protein
STRINGMigut.I00669.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66682333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-149floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Coen ES, et al.
    floricaula: a homeotic gene required for flower development in antirrhinum majus.
    Cell, 1990. 63(6): p. 1311-22
    [PMID:1702033]