PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011073588.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ERF
Protein Properties Length: 329aa    MW: 35921.8 Da    PI: 4.826
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011073588.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.5e-19121170255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g
  XP_011073588.1 121 KFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDHAAIQLRG 170
                     79*******.**********72....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.57E-21121178IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-29121178IPR001471AP2/ERF domain
PfamPF008475.3E-12121170IPR001471AP2/ERF domain
CDDcd000189.48E-32121177No hitNo description
SMARTSM003805.0E-37121184IPR001471AP2/ERF domain
PROSITE profilePS5103223.63121178IPR001471AP2/ERF domain
PRINTSPR003673.5E-10122133IPR001471AP2/ERF domain
PRINTSPR003673.5E-10144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MLPGKRVKYT EQVYHTVVVG RPEYSISGGE TPFPVEMTTR IVRISVTDAD ATDSSSDEEG  60
GSSGSRQRVR KFINEVRIQP CCSDNGNGNG VAKSGSRASV SMLKRKKCSG GKTKNAAKLG  120
KFRGVRQRPW GKWAAEIRDP LRRVRLWLGT YDTAEEAAMV YDHAAIQLRG PDALTNFSTP  180
PVKHNKTSSG YNSGEESHSN VTSPKSVLRF VSATDSQAEA ESCSIFSPSN DGVLIKENDD  240
DYFSDVSIFP RGDDLFIDFE NPVPVPDLFD EAGLSDNNIF GLDLDSCEDV LIGPNTTDLG  300
IRSGPSKWQA DDFFQDFGDI FGSDPLVAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-19122177359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-19117177162ATERF1
3gcc_A1e-19117177162ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011073588.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073588.10.0ethylene-responsive transcription factor CRF2-like
TrEMBLA0A2G9I1I21e-153A0A2G9I1I2_9LAMI; Uncharacterized protein
STRINGMigut.A00686.1.p1e-128(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.21e-42cytokinin response factor 2