PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011073463.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HSF
Protein Properties Length: 349aa    MW: 39994.7 Da    PI: 5.4963
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011073463.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.72.8e-36491402102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y+++ed++++e++sws+ +nsf+v+d+++fa ++Lp+yFkh+nf+SFvRQLn+YgF+kv++++         weF+++ F +g+++ll++
  XP_011073463.1  49 FLSKTYDLVEDPTTNEIVSWSRGNNSFIVWDPQTFAMNLLPRYFKHNNFSSFVRQLNTYGFRKVDSDK---------WEFANQRFLRGQRHLLKD 134
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k+
  XP_011073463.1 135 IRRRKT 140
                     ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.3E-3942133IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.35E-3445138IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.4E-5945138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.6E-204972IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-3149138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.6E-208799IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434088112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.6E-20100112IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MFWERDMNDM GSIKEEYLGS TSTSSASFTD RRSVPQPMEG LHETGPPPFL SKTYDLVEDP  60
TTNEIVSWSR GNNSFIVWDP QTFAMNLLPR YFKHNNFSSF VRQLNTYGFR KVDSDKWEFA  120
NQRFLRGQRH LLKDIRRRKT PSTSNSNQAN LDSCVEVGRF GLDAEIDRLR RDKTVLMVEL  180
VKLRQQQQNT KSYLKELEQR VRGTELKQQQ TMSFLARALQ NPTFLQQIVQ RKELEEQISM  240
KRRKKIDHGC PFSAHIHDDN VGVGEFEGVG GIYAKVEAQD QYGDMNGFDH EDHQELLGFD  300
SGEKSSIGKG LWEELLNDGI GTFGVEGGFD EEGVDVLAEQ MGFLGSSPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-264714027131Heat shock factor protein 1
5d5v_B3e-264714027131Heat shock factor protein 1
5d5v_D3e-264714027131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011073463.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073463.10.0heat stress transcription factor A-6b-like
SwissprotQ9LUH81e-116HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A2G9GL711e-139A0A2G9GL71_9LAMI; Heat shock transcription factor
STRINGGorai.006G242400.11e-132(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-112heat shock transcription factor A6B