PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011073398.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

FAR1

Protein Properties

Length: 763aa MW: 87944.3 Da PI: 4.9352

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011073398.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.8	5.6e-21	156	239	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etrtgC a++++++ ++++w++++++leHnH + XP_011073398.1 156 NYYNCYAKELGFGIRVKSSWTKRNSKEKRGAVLCCNCEGFKTMKEAS-----TRRKETRTGCLAMIRLRLVETNRWRLDEVKLEHNHLF 239 69**************************************98877.....8999*****************************76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-18	156	238	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.6E-26	360	447	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.718	645	681	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	8.2E-5	655	679	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.5E-4	656	683	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 763 aa Download sequence Send to blast
MEEGSENSEE LLDDEGEEDF EIGTNDLGDE GSQLLQEKNN DLENAIQQVL RIQRVDLEND 60 GVPVLGIHGV DLENGNEHVL EFESNGHEGN SERMLEIPST DKDSCSDQML GVPGSDKENA 120 TDADMAVMGG QTDTGGKSYL PPVEGMEFES YDDAYNYYNC YAKELGFGIR VKSSWTKRNS 180 KEKRGAVLCC NCEGFKTMKE ASTRRKETRT GCLAMIRLRL VETNRWRLDE VKLEHNHLFD 240 HQRAQNSRSH KKMEAGAKRK FESAVDVEVR TIKLYRTPAV DAVSCGSSSE RELSNHVEMA 300 KRLKLRNGDV VALYDYFRRA QLADPNFFYI MDLNDEGYAR NVFWIDSRSR AAYGYFGDMV 360 IVDSTCLSNK HDIPLLSFSG LNHHGQPILL GCSLLVDETF ETYLWLMRAW LTCMIGRPPQ 420 TIITDQCKAL QDAISEVFPR AHHCLCLPLV MKSIHEKLGE VAESEIFQTV LNRTVYNSMK 480 VEEFEMAWEE MIQHFAFRDH KWLQSLYEDR ERWVPVYLKD TFVAGIYSSE PGEYVAPFFH 540 GYIHDQMTLN EFFSMYELLQ QKKIQKEALD DLNSREFRPV LRTRCNYELQ LSELYTKEIF 600 LKFQEEVVLM SGCFSVTQIH ANGPIFTYMI KERDAEGDAR EAKNFEVVYD KVGVDVRCIC 660 SCFNFRGYLC RHALSVLSYS GVEEIPIQYI LTRWRKDVER LYTPDLGSNN IDISNPVQWY 720 DHLYRRAMQV VAEGMASQDH HMVAWQAFKE SLNKVRLVAE KPV

Sequence ? help Back to Top

Protein Sequence Length: 763 aa Download sequence Send to blast

MEEGSENSEE LLDDEGEEDF EIGTNDLGDE GSQLLQEKNN DLENAIQQVL RIQRVDLEND  60
GVPVLGIHGV DLENGNEHVL EFESNGHEGN SERMLEIPST DKDSCSDQML GVPGSDKENA  120
TDADMAVMGG QTDTGGKSYL PPVEGMEFES YDDAYNYYNC YAKELGFGIR VKSSWTKRNS  180
KEKRGAVLCC NCEGFKTMKE ASTRRKETRT GCLAMIRLRL VETNRWRLDE VKLEHNHLFD  240
HQRAQNSRSH KKMEAGAKRK FESAVDVEVR TIKLYRTPAV DAVSCGSSSE RELSNHVEMA  300
KRLKLRNGDV VALYDYFRRA QLADPNFFYI MDLNDEGYAR NVFWIDSRSR AAYGYFGDMV  360
IVDSTCLSNK HDIPLLSFSG LNHHGQPILL GCSLLVDETF ETYLWLMRAW LTCMIGRPPQ  420
TIITDQCKAL QDAISEVFPR AHHCLCLPLV MKSIHEKLGE VAESEIFQTV LNRTVYNSMK  480
VEEFEMAWEE MIQHFAFRDH KWLQSLYEDR ERWVPVYLKD TFVAGIYSSE PGEYVAPFFH  540
GYIHDQMTLN EFFSMYELLQ QKKIQKEALD DLNSREFRPV LRTRCNYELQ LSELYTKEIF  600
LKFQEEVVLM SGCFSVTQIH ANGPIFTYMI KERDAEGDAR EAKNFEVVYD KVGVDVRCIC  660
SCFNFRGYLC RHALSVLSYS GVEEIPIQYI LTRWRKDVER LYTPDLGSNN IDISNPVQWY  720
DHLYRRAMQV VAEGMASQDH HMVAWQAFKE SLNKVRLVAE KPV

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011073398.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020548549.1	0.0	protein FAR1-RELATED SEQUENCE 8 isoform X2
Refseq	XP_020548550.1	0.0	protein FAR1-RELATED SEQUENCE 8 isoform X2
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A2G9GPD8	0.0	A0A2G9GPD8_9LAMI; Uncharacterized protein
STRING	XP_009631083.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]