PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011073364.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ERF
Protein Properties Length: 290aa    MW: 31605.7 Da    PI: 10.6848
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011073364.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-20135184255
             AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++aa+++l+g
  XP_011073364.1 135 SYRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAARRLRG 184
                     69*******.**********32....25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.50E-16134193No hitNo description
PfamPF008472.8E-14135184IPR001471AP2/ERF domain
PROSITE profilePS5103222.761135192IPR001471AP2/ERF domain
SMARTSM003801.9E-33135198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-29135192IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-22135193IPR016177DNA-binding domain
PRINTSPR003671.2E-10136147IPR001471AP2/ERF domain
PRINTSPR003671.2E-10158174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MNQTTSLPTL LPADLPCFPI LQFLQHPHPH QQMQMLHQWP PLDHPTSPPA ISFLHSFSPV  60
RAPEQDHLPQ PQNRISDDAF SSKPPVTLEG IAAVVGEHVL FGGSRKLVDE NLRAENPRKE  120
IDGNHRNGAV GVKKSYRGVR KRPWGRWSAE IRDRIGRCRH WLGTFDTAEE AARAYDAAAR  180
RLRGSKARTN FQIPSVLPEP SLNNSSSSSC DQTRKRSRSG GSNNVKGKVV ESSVGKKCSV  240
VTCAAHLFGP SRSGVVVADS KRSGGVSLEL GLKLGGGFSE STSRASSMVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-17134193161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011073364.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073364.10.0ethylene-responsive transcription factor ERF084
SwissprotQ9M8M51e-29ERF84_ARATH; Ethylene-responsive transcription factor ERF084
TrEMBLA0A2G9GL433e-69A0A2G9GL43_9LAMI; Uncharacterized protein
STRINGXP_004305488.12e-54(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA115522225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.14e-28ERF family protein