PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011073162.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

BBR-BPC

Protein Properties

Length: 307aa MW: 33917.6 Da PI: 9.9557

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011073162.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	308.6	2.1e-94	1	307	1	301
GAGA_bind 1 mdddgsre.rnkgyyepa.aslkenlglqlmssiaerdaki.........rernlalsekkaavaerd.....maflqrdkalaernkalverdn 79 md +gs + rn+g+ ep a+lk++lglqlmss+ae+ + + + s++ ++++++ +++ d ++++ ++ XP_011073162.1 1 MDGNGSINfRNWGFLEPPtAALKNHLGLQLMSSMAEKPLFGcgirdhhntHPSSVMASTNGGPYHHHRvggipESHIPMDCWMTQ-------NRE 88 9999**********9989**********987654356665544455555444555566666589999999999*9.......455 PP GAGA_bind 80 kllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkek.kakkkkkksek 173 k+ + l n+ p +++v+++t+s +s+q+ ++ l+++ ++ ++++ + +++ + +kkr +k+ k++ k+kk++ + + XP_011073162.1 89 KYPNFLS-GNQDHGYYPLSYGVSPETSSSHSIQMPQQIILQKNEDVISPMDEV--CEERDNGNGGGADGLVKKRGGGKVSKSPpKEKKPRTRVPR 180 6666555.34445689**************8776666666555555533..3334555555666666666666666665144455555555 PP GAGA_bind 174 skkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkkl 268 ++++++s+ +r++a+kk ++v+ng+++D+s++P+PvCsCtG ++qCY+WG+GGWqSaCCtt++S+yPLP++tkrrgaRiagrKmS gafkk+ XP_011073162.1 181 AVQNESTPSV-HRARAPKKRAEVVINGMNMDISGIPIPVCSCTGNPQQCYRWGSGGWQSACCTTSLSMYPLPMNTKRRGARIAGRKMSIGAFKKV 274 5555555554.79****************************************************************************** PP GAGA_bind 269 LekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 LekL +eGy++snp+DL+++WAkHGtnkfvtir XP_011073162.1 275 LEKLVSEGYNFSNPIDLRNYWAKHGTNKFVTIR 307 ******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	4.6E-126	1	307	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	5.2E-98	1	307	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MDGNGSINFR NWGFLEPPTA ALKNHLGLQL MSSMAEKPLF GCGIRDHHNT HPSSVMASTN 60 GGPYHHHRVG GIPESHIPMD CWMTQNREKY PNFLSGNQDH GYYPLSYGVS PETSSSHSIQ 120 MPQQIILQKN EDVISPMDEV CEERDNGNGG GADGLVKKRG GGKVSKSPPK EKKPRTRVPR 180 AVQNESTPSV HRARAPKKRA EVVINGMNMD ISGIPIPVCS CTGNPQQCYR WGSGGWQSAC 240 CTTSLSMYPL PMNTKRRGAR IAGRKMSIGA FKKVLEKLVS EGYNFSNPID LRNYWAKHGT 300 NKFVTIR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011073162.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011073162.1	0.0	protein BASIC PENTACYSTEINE2-like
TrEMBL	A0A2G9HQ94	1e-173	A0A2G9HQ94_9LAMI; Uncharacterized protein
STRING	XP_009761371.1	1e-118	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10048	20	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	2e-78	basic pentacysteine 2