PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011073081.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 194aa MW: 22440.8 Da PI: 10.3769 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.6 | 1.6e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvtfskRrng+lKKA+ELSvLCdaeva++ifs++gk + +ss XP_011073081.1 9 KRIENATNRQVTFSKRRNGLLKKAFELSVLCDAEVALLIFSPSGKAFQFSS 59 79********************************************99986 PP | |||||||
2 | K-box | 75.3 | 1.7e-25 | 78 | 172 | 6 | 100 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++++ +++e +++e++ +k+ ++ L+ + l Ge+L+ L +keL+qLe+qL ++++iRskK ++++++i++l+++ k+lqeen++L+kkl e XP_011073081.1 78 SNDQGITTMEVWRNEIEDMKRTVDDLEARDKYLSGENLSGLGMKELKQLERQLRIGVERIRSKKRRMIMDHINYLKRRHKDLQEENNNLQKKLHE 172 5557778899*****************999**************************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.2E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.324 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.09E-32 | 2 | 79 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.26E-40 | 2 | 70 | No hit | No description |
PRINTS | PR00404 | 1.1E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.1E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.2E-23 | 84 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.399 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MGRGKVELKR IENATNRQVT FSKRRNGLLK KAFELSVLCD AEVALLIFSP SGKAFQFSSH 60 DMQRSIARYK SEVGMTKSND QGITTMEVWR NEIEDMKRTV DDLEARDKYL SGENLSGLGM 120 KELKQLERQL RIGVERIRSK KRRMIMDHIN YLKRRHKDLQ EENNNLQKKL HELGEANVTS 180 AIISESNAAT LFHM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 4e-23 | 1 | 87 | 1 | 89 | MEF2 CHIMERA |
6byy_B | 4e-23 | 1 | 87 | 1 | 89 | MEF2 CHIMERA |
6byy_C | 4e-23 | 1 | 87 | 1 | 89 | MEF2 CHIMERA |
6byy_D | 4e-23 | 1 | 87 | 1 | 89 | MEF2 CHIMERA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011073081.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011073081.1 | 1e-141 | MADS-box transcription factor 23 isoform X2 | ||||
TrEMBL | Q0JRW1 | 1e-110 | Q0JRW1_9LAMI; Deficiens H7 homologue | ||||
STRING | Migut.D01274.1.p | 1e-108 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42830.1 | 8e-50 | MIKC_MADS family protein |