PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011072947.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | CO-like | ||||||||
Protein Properties | Length: 393aa MW: 43665.5 Da PI: 5.063 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 27.7 | 5.8e-09 | 18 | 61 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + k++++fC ++ +lC++C ++ H+ H++v XP_011072947.1 18 ARACDSCLLKRARWFCAADDAFLCQSCDVSVHSAnqlasrHERV 61 578*****************************667888888876 PP | |||||||
2 | CCT | 68.7 | 1.6e-23 | 336 | 379 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ XP_011072947.1 336 REARVLRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 379 9*****************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 6.5E-11 | 16 | 63 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.808 | 16 | 63 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.3E-7 | 18 | 61 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.35E-8 | 19 | 63 | No hit | No description |
PROSITE profile | PS51017 | 16.152 | 336 | 378 | IPR010402 | CCT domain |
Pfam | PF06203 | 5.3E-18 | 336 | 378 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MNIVDQCKAA NALGGKTARA CDSCLLKRAR WFCAADDAFL CQSCDVSVHS ANQLASRHER 60 VRLEASSFKG SEGHSSPAWH QGFTRKARTP RQGKPAARLQ PLANHAFPLV PEINAEDGAF 120 SEENEEQFLY RVPVFDPFAD EFCSETVKGE EADGGHDLNL AELLSTCDDD LAEFAADVEN 180 LLGTGVEEGS GCPIHCKDED NGSDELLHGK GVKIEEDDDD DDEVQAVIAC HFDPALDMEL 240 NWDFDYVSSM ARQETKNVAA IETTSSMDSG SESHAKTRMF LRLNYEAVIA AWAAQGSPWT 300 NGVRPHFNLD DFMVTCLEGD SHPSCGGRSG ANDAEREARV LRYREKRRTR LFSKKIRYEV 360 RKLNAEKRPR MKGRFVKRTN FSGSSSLPYL INK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 346 | 362 | RRTRLFSKKIRYEVRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011072947.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ049113 | 4e-58 | KJ049113.1 Sesamum indicum clone TilSSR_20314 microsatellite Sesame_20314 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011072947.1 | 0.0 | zinc finger protein CONSTANS-LIKE 6 | ||||
TrEMBL | A0A2G9H1F3 | 0.0 | A0A2G9H1F3_9LAMI; GATA-4/5/6 transcription factor | ||||
STRING | XP_009798338.1 | 1e-136 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1539 | 24 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68520.1 | 1e-86 | B-box type zinc finger protein with CCT domain |