PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011072744.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GATA
Protein Properties Length: 300aa    MW: 32745.1 Da    PI: 6.8434
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011072744.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.11.8e-16221257135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ kg+
  XP_011072744.1 221 CRHCGISEksTPMMRRGPEGPRTLCNACGLMWANKGT 257
                     *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.3E-1278113IPR010399Tify domain
PROSITE profilePS5132014.85578113IPR010399Tify domain
PfamPF062002.6E-1380112IPR010399Tify domain
PROSITE profilePS5101713.205145187IPR010402CCT domain
PfamPF062036.3E-16145187IPR010402CCT domain
PROSITE profilePS5011410215276IPR000679Zinc finger, GATA-type
SMARTSM004012.5E-12215268IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.38E-12218277No hitNo description
Gene3DG3DSA:3.30.50.108.8E-16220262IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.34E-14220263No hitNo description
PROSITE patternPS003440221248IPR000679Zinc finger, GATA-type
PfamPF003202.0E-14221257IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MDGMHANEAG MMHYLQDQHH HGLHHHMSNG NAIDQDEHGE NNNIGSSGGV NEVIDGDVAP  60
DIGNQSDNHG QLIPQVGGTE NNNQLTLSFQ GQVYVFDSVS PEKVQAVLLL LGGREVPPNI  120
PTVPVSASNN RGLSSTPQKF NVPQRLASLI RFREKRKERN FDKKIRYTVR KEVALRMQRN  180
KGQFTSSKPN HDDSASAASS WDSNQSWGAD GNGSQVQDIS CRHCGISEKS TPMMRRGPEG  240
PRTLCNACGL MWANKGTLRD LSKATTPLGA NTLRNRNEEN GNFEAEEMVL SAAGNGHDSS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011072744.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072744.10.0GATA transcription factor 28
SwissprotQ8H1G01e-112GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A2G9I2N60.0A0A2G9I2N6_9LAMI; Uncharacterized protein
STRINGMigut.I01184.1.p1e-176(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26722348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-106ZIM-like 1