PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011072679.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | ERF | ||||||||
Protein Properties | Length: 393aa MW: 43582.2 Da PI: 4.6609 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.4 | 8.4e-19 | 119 | 168 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++ +++++g XP_011072679.1 119 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDTEARRIRG 168 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.3E-32 | 119 | 177 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.49E-32 | 119 | 177 | No hit | No description |
PROSITE profile | PS51032 | 24.052 | 119 | 176 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-22 | 119 | 177 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.2E-37 | 119 | 182 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 120 | 131 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.1E-11 | 120 | 167 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 142 | 158 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070483 | Biological Process | detection of hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MCGGAIISDI IAPASRSSRR LTADLLWGSG SVDLYKKKNP GNYHSKPMRS QPVIDLDDDF 60 EADFQEFKDF SDDEGEIDVK KPFSFSASKN PGLKGLKSAD SAEYDDDAEK SSKRKRKNQY 120 RGIRQRPWGK WAAEIRDPRK GVRVWLGTFN TAEEAARAYD TEARRIRGKK AKVNFPEYVP 180 AAASRRTVKV NSHKVLPKGS TESVQPNVNE SVNFMNMLNS DYYDSLGFLE EKPQVKQYGF 240 ADTCPATGDM RLKPLTPTDG TNVYFSSDQG SNSFDCSDFG WGENCAKTPE ISSVLSAVIE 300 DDQAQFMEDG GPAKRAKSSS EDLVPRDENT VNKVSDDLSA FDSQMKLFQM PDLDSNWDAS 360 IDAFLNGDAT QDGANAMDLW SFEDVPAMLG GVY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-21 | 119 | 176 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00204 | DAP | Transfer from AT1G53910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011072679.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF278731 | 7e-63 | KF278731.1 Coffea arabica ethylene response factor 5 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011072679.1 | 0.0 | ethylene-responsive transcription factor RAP2-12-like isoform X1 | ||||
TrEMBL | A0A2G9GX08 | 0.0 | A0A2G9GX08_9LAMI; Uncharacterized protein | ||||
STRING | Migut.I01124.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1446 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.3 | 2e-72 | related to AP2 12 |