PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011072652.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family AP2
Protein Properties Length: 493aa    MW: 53844.5 Da    PI: 6.874
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011072652.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.31.2e-15256315155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_011072652.1 256 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 315
                     78*******************655454478446*************************98 PP
2AP246.68.7e-15360409355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_011072652.1 360 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 409
                     9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.3E-12256315IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-17256325IPR016177DNA-binding domain
CDDcd000182.05E-21256325No hitNo description
Gene3DG3DSA:3.30.730.103.1E-16257324IPR001471AP2/ERF domain
SMARTSM003806.7E-30257329IPR001471AP2/ERF domain
PROSITE profilePS5103219.177257323IPR001471AP2/ERF domain
PRINTSPR003671.9E-6258269IPR001471AP2/ERF domain
CDDcd000187.49E-24358419No hitNo description
SuperFamilySSF541711.11E-17358419IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-18359417IPR001471AP2/ERF domain
PROSITE profilePS5103219.137359417IPR001471AP2/ERF domain
SMARTSM003801.3E-33359423IPR001471AP2/ERF domain
PfamPF008471.1E-9360409IPR001471AP2/ERF domain
PRINTSPR003671.9E-6399419IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MSSNNWLGFS LTPHLRVGGD AEVGGDATEE EVAVAADDSR GGGACCFPAA TAAHVPVMPL  60
RSDGSFSVLD SKHYWRYDND MNGPNLNEEG PKFEDFLGCC YSNSPSSEPG EINMNMPPNF  120
SSCSDDHHKR ENFTVPSPFF PPYHYTIVPT ATAANPDGVF SAAFGGGGGG SVATSVSGFK  180
SWLQQTEKPS VEGSSRCDFQ ALSLTVNPSS QPDIPVAVPL PLQTAGDGKK RAVAKSSSVK  240
EPVPRKSIDT FGQRTSQYRG VTRHRWTGRY EAHLWDNSCR KEGQTRKGRQ VYLGGYDKEE  300
KAARAYDLAA LKYWGPTTHI NFPLSSYEKE LEEMKNMSRQ EFVAHLRRKS SGFSRGASMY  360
RGVTRHHQHG RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGM SAVTNFDISR  420
YDVKRICSSS TLIGGDLAKR SPKDSGPSSH EDYNSCASSA SPRAFLPMAN GESNSDELAD  480
IMWNASSEDQ GQQ
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011072652.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072652.10.0AP2-like ethylene-responsive transcription factor AIL1, partial
SwissprotQ1PFE11e-144AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A2G9HXS40.0A0A2G9HXS4_9LAMI; Uncharacterized protein
STRINGEOY272400.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87772127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-129AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]