PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011072643.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 347aa    MW: 38976.6 Da    PI: 9.0853
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011072643.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.89e-0688110123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F r  nL+ H r H
  XP_011072643.1  88 FVCEICNKGFQRDQNLQLHRRGH 110
                     89*******************88 PP
2zf-C2H212.70.00037164186123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k +  +s+ k H +t+
  XP_011072643.1 164 WKCDKCSKKYAVQSDWKAHSKTC 186
                     58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.48E-787110No hitNo description
Gene3DG3DSA:3.30.160.601.0E-587110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01788110IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94988110IPR007087Zinc finger, C2H2
PfamPF121715.1E-588110IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
SMARTSM00355250129159IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.2E-4152185IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.48E-7159184No hitNo description
SMARTSM00355150164184IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MKGLALIQTE ENMSNLTSAS GEASVSSSNR NDNSGGNNMY PPQYFPPLNQ PQPQSQPVKK  60
KRNQPGHPDP DAEVIALSPR TLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRN  120
SKEVRKKVYV CPETSCVHHD PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KKYAVQSDWK  180
AHSKTCGTRE YRCDCGTLFS RRDSFITHRA FCDALAEESA RSITGNNNNI PLQSSAISHH  240
INLQQVQSQF SNSANHELPF SVKKEQQNFC LRPEIPPWLA CPPTMVPHPG PPTPIDLTAP  300
SSSSLFQDFQ QNQDFSQNHD HHNQNANPNP SSTTATSLGP TTLPPYH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-38160229372Zinc finger protein JACKDAW
5b3h_F6e-38160229372Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114126KLKQRNSKEVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011072643.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4651831e-131AM465183.2 Vitis vinifera contig VV78X062580.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072643.10.0protein indeterminate-domain 11, partial
SwissprotQ9LRW71e-120IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLA0A1Q3DDM01e-158A0A1Q3DDM0_CEPFO; Zf-C2H2_jaz domain-containing protein
STRINGXP_009626387.11e-152(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-101indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]