PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011072642.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

LBD

Protein Properties

Length: 300aa MW: 33666.5 Da PI: 6.6185

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011072642.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	122.7	1.9e-38	42	140	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkCa+dCvlapyfp++++++f n+h+lFG+sn++k++++l++ +++am++++++++ara dPv G++++i++l+q+++ +kael+ XP_011072642.1 42 ACAACKYQRRKCASDCVLAPYFPHDRQRQFLNAHRLFGVSNIVKIVRHLDPPAKDHAMRTIIFQSDARAADPVGGCHRIIRDLEQRISLAKAELE 136 7*********************************************************************************************9 PP DUF260 96 llke 99 + + XP_011072642.1 137 IVLH 140 8766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.17	41	142	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.9E-36	42	137	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MHNNKKSNIT SIINNNNNTK NITRTTSVPL SHPRSHGSTT QACAACKYQR RKCASDCVLA 60 PYFPHDRQRQ FLNAHRLFGV SNIVKIVRHL DPPAKDHAMR TIIFQSDARA ADPVGGCHRI 120 IRDLEQRISL AKAELEIVLH HLALCRAAAT QQQVVPAPDC GGSYDEKWRV PYVAEDEAVT 180 VDDVNSWGCM PGNVHTNAES TSSSFPHHND NSNHHHMRKL SVEECNNDVL PILDHLTCDD 240 DVREEDFKFD HHGNIVPSSN GILTEEKGTF KEDDDCFSYV QDHHDLKAAA TFFSLTNCDI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-21	43	156	12	123	LOB family transfactor Ramosa2.1
5ly0_B	1e-21	43	156	12	123	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011072642.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011072642.2	0.0	LOB domain-containing protein 7-like isoform X1
TrEMBL	A0A4D9B6C5	1e-128	A0A4D9B6C5_SALSN; Uncharacterized protein
STRING	Migut.D00966.1.p	1e-114	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9926	21	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	5e-50	LOB domain-containing protein 22