PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011072582.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | GRAS | ||||||||
Protein Properties | Length: 543aa MW: 60626.6 Da PI: 6.7496 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 247.1 | 6.9e-76 | 156 | 536 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 ++lL cA a+++++l+++q++L l++l+s +gd+++Rla + ++AL ++l++ + +++ + ++ ++++ + al f+++ P++++ + XP_011072582.1 156 EQLLNPCAAAITARNLSRVQHFLYVLNDLSSLNGDANHRLAYHGLQALTHHLSSAPGSSFSSASGKTFASSSPKFFRDALIKFNDINPWFRIPNN 250 689***************************************************6666666777777776666777777777************* PP GRAS 97 taNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg..........skeeleetgerLakfAeelgvpf 176 + N Il+ ++++ + +Hi+D+++s+G+QWp+Ll++L+ R+ ++pp +R+T+v++p+s+ + + ++L +fA+ +++++ XP_011072582.1 251 VVNTSILQILAEQgnqqTNLHILDIGVSHGVQWPTLLEELTRRTgGPPPLVRLTVVAPPTSNdqsrhttpfaNGPQNYDFSSKLLSFAKDMNINL 345 ********998877776889************************55666*********9998899999998888889999*************** PP GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh...nsesFlerflealeyysalf 268 +++ + +l++l+ + ++ + +E+l+V+ +++lh+l +s+++ r+e+L++++sl+Pk v+++e+++d+ n ++F+++f++ +ey + ++ XP_011072582.1 346 QISRIENFQLQNLNSQVISSSAEETLVVCAQFRLHNLN---HSTPDDRTEFLRVLRSLQPKGVILSENNTDCscsNCGDFATGFSRRVEYLWRFL 437 ****7666*****************************8...77777788******************99555337888***************** PP GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgW 362 ds+++ + + r + Er++++ e+ +v+ + g++ +e++ekW er++ +GFk ++e++ + a++llrk++ +++ rvee++ ++ l W XP_011072582.1 438 DSTSVAF----KGRESEERRMMEAEAAKVLINVGEM----NERKEKWCERMKGVGFKVEVFGEETIDGARALLRKYDsNWEIRVEEKDSCVGLWW 524 ***8886....6666666666777799999999999....78888********************************9999************** PP GRAS 363 kdrpLvsvSaWr 374 k++++ ++S W+ XP_011072582.1 525 KGQQVSFCSLWK 536 ***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 39.031 | 129 | 515 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.4E-73 | 156 | 536 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042446 | Biological Process | hormone biosynthetic process | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation |
Sequence ? help Back to Top |
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Protein Sequence Length: 543 aa Download sequence Send to blast |
MTIGEPEPNP PPDHVLGWMG ESVSYFPTFF DDPYETGDFS GDSWWVDGHN LEQDQVNTSA 60 NSFTTNTTSI TPVPTDTVVS NHSIPVDLPK KRKLPDDSSP KAAQKNKNRR VNESDPGPAG 120 AAQGVAPRKP TTHKRGSRSA GSSNNNSNNK EGRWAEQLLN PCAAAITARN LSRVQHFLYV 180 LNDLSSLNGD ANHRLAYHGL QALTHHLSSA PGSSFSSASG KTFASSSPKF FRDALIKFND 240 INPWFRIPNN VVNTSILQIL AEQGNQQTNL HILDIGVSHG VQWPTLLEEL TRRTGGPPPL 300 VRLTVVAPPT SNDQSRHTTP FANGPQNYDF SSKLLSFAKD MNINLQISRI ENFQLQNLNS 360 QVISSSAEET LVVCAQFRLH NLNHSTPDDR TEFLRVLRSL QPKGVILSEN NTDCSCSNCG 420 DFATGFSRRV EYLWRFLDST SVAFKGRESE ERRMMEAEAA KVLINVGEMN ERKEKWCERM 480 KGVGFKVEVF GEETIDGARA LLRKYDSNWE IRVEEKDSCV GLWWKGQQVS FCSLWKMDED 540 RLT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 7e-34 | 152 | 536 | 84 | 473 | Protein SHORT-ROOT |
5b3h_B | 4e-34 | 152 | 536 | 30 | 419 | Protein SHORT-ROOT |
5b3h_E | 4e-34 | 152 | 536 | 30 | 419 | Protein SHORT-ROOT |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011072582.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011072582.1 | 0.0 | nodulation-signaling pathway 1 protein | ||||
Swissprot | Q4VYC8 | 0.0 | NSP1_MEDTR; Nodulation-signaling pathway 1 protein | ||||
TrEMBL | A0A2G9HXR4 | 0.0 | A0A2G9HXR4_9LAMI; Uncharacterized protein | ||||
STRING | Migut.I01075.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4949 | 21 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13840.1 | 1e-147 | GRAS family protein |
Publications ? help Back to Top | |||
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