PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011072535.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 402aa    MW: 44752.1 Da    PI: 7.2018
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011072535.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.23.8e-185097148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l+++++ +G g+W++++r  g+ R++k+c++rw +yl
   XP_011072535.1 50 RGLWSPEEDEKLINYITAHGHGCWSAVPRLAGLQRCGKSCRLRWINYL 97
                     788*******************************************97 PP
2Myb_DNA-binding50.26.1e-16103145145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg+++++E  l+v++++ lG++ W+ Ia++++ gRt++++k++w+
   XP_011072535.1 103 RGNFSPQEAALIVELHRILGNR-WAQIAKHLP-GRTDNEIKNFWN 145
                      89********************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-2642100IPR009057Homeodomain-like
PROSITE profilePS5129417.8244597IPR017930Myb domain
SuperFamilySSF466895.24E-2947144IPR009057Homeodomain-like
SMARTSM007173.7E-134999IPR001005SANT/Myb domain
PfamPF002492.4E-155097IPR001005SANT/Myb domain
CDDcd001672.03E-115397No hitNo description
PROSITE profilePS5129425.28198152IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-25101153IPR009057Homeodomain-like
SMARTSM007171.0E-15102150IPR001005SANT/Myb domain
PfamPF002492.5E-14103146IPR001005SANT/Myb domain
CDDcd001671.90E-11105145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MADSWTTGHF QTSIKHPQSL SKVHRIAGFP TSNKEMSSHH NCCNKQKVKR GLWSPEEDEK  60
LINYITAHGH GCWSAVPRLA GLQRCGKSCR LRWINYLRPD LKRGNFSPQE AALIVELHRI  120
LGNRWAQIAK HLPGRTDNEI KNFWNSSIKK KLVAQHHLSS DPTTATFPQN SIGNGSTSSQ  180
NLYLMNQTNN LMIPNPQMDH MMFPNPQMDQ IYNIPPPPPV PIPMPLQGFD QVMNYSVNLP  240
HNIPPPMPMD PSVSDLPPWP ISCNPAPILD QNQHQTDPLL KLDDPFMFSF ENPIPSFLNP  300
KPEFQAYDQD SAMLDALMPE LGEMVKVLEY GMLPSSPAFQ EQLLDPTAGF SGFISALGPQ  360
YPNNINNISS LMASFAPPGP PSSSAGPFLP PFPGRGPFLG SI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-30501527108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011072535.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072535.10.0transcription factor MYB39
TrEMBLA0A2G9HXP01e-131A0A2G9HXP0_9LAMI; Transcription factor, Myb superfamily
STRINGVIT_09s0002g01670.t015e-84(Vitis vinifera)
STRINGPOPTR_0001s20370.11e-83(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1589635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.22e-75myb domain protein 26