PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011072523.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family FAR1
Protein Properties Length: 750aa    MW: 86286.2 Da    PI: 7.7113
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011072523.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR182.38.2e-2630116191
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     ++Y+eYAk+vGF + k +s++s+ ++e+++++f C ++g++++++++     ++r++ ++gCka+++vk++ +gkw+++++ ++HnHel p
  XP_011072523.1  30 EYYKEYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRPNGKWYIHSFMKDHNHELLP 116
                     69***************************************999877....9************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.3E-2430116IPR004330FAR1 DNA binding domain
PfamPF105511.6E-24230324IPR018289MULE transposase domain
PROSITE profilePS5096610.299510546IPR007527Zinc finger, SWIM-type
PfamPF044341.6E-8516544IPR007527Zinc finger, SWIM-type
SMARTSM005752.8E-7521548IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MEASGSSLVA NSTLEPRDDM EFDTHEAAYE YYKEYAKSVG FGTAKLSSRR SRASKEFIDA  60
KFSCIRYGNK QQSDDAINPR PSPKIGCKAS MHVKRRPNGK WYIHSFMKDH NHELLPAQAH  120
FFRSHRSADN LNIDAKVRKK KVMASVLKQY GSYQFSGSCI ENVIRNQHDR GRYLSLEEGG  180
AQVVLEFCTH MHEENPKFFY ALDFNEEHRL RNVFWVDAKG VEDFTYFGDV VSFDTTYFAN  240
KYRIPLVLLI GVNHHVQPTL LGCGLIADET LCTFVWLMQS WYLAMGGRSP RVLLTDQNEA  300
IKAAVSLVFS DTHHFFHLWH VLENIPRRLD YLSIWHDTFM EKFNKCIYRS WNEVQFEKRW  360
WKLIERFNLR EDEWLQALYE DRKLWVPAFV KDVSFAGLSA ASRSESLNSF FDRYIHGEMS  420
LRDLIGKYKS ILEDRYEEEA KANFDAWHET PELKSPSPFE KQMLFVYSHE IFKKFQMEVL  480
GAAACHLKKE KEDGTTVLYG VKDFENSQDF MVEWNELKSD IYCSCHSFEY KGYLCRHAIV  540
VLQMSGVFSI PFKYILKRWT NAAKSKIPLS EKLDEVQAKV RRYNDLCRRA IILGEEGSLS  600
QDSYNAAVCA ITEALKQCEN VNKNSENISR SILPAPLAIQ GVAGVNHYGT ITCGQQLPVC  660
KVTNTNKVSK RTNSGKEPAG NGEISSKKGK VPLEPQMTNV GTQGIFQHMD MPGPLDYPTL  720
YPRFLTTLLK GGEVSKRSVE MLGEMLEEQS
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011072523.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072522.10.0protein FAR1-RELATED SEQUENCE 4
RefseqXP_011072523.10.0protein FAR1-RELATED SEQUENCE 4
SwissprotQ6NQJ70.0FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBLA0A2G9GHM00.0A0A2G9GHM0_9LAMI; Uncharacterized protein
STRINGMigut.I01028.1.p0.0(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.10.0FAR1-related sequence 4
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]