PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011072418.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GATA
Protein Properties Length: 325aa    MW: 35447 Da    PI: 6.5022
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011072418.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.18.9e-17213247135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  XP_011072418.1 213 CLHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRL 247
                     99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.0E-7910303IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.479207243IPR000679Zinc finger, GATA-type
SMARTSM004014.5E-16207257IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.04E-13209266No hitNo description
Gene3DG3DSA:3.30.50.101.1E-13211245IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.79E-11212246No hitNo description
PfamPF003201.2E-14213247IPR000679Zinc finger, GATA-type
PROSITE patternPS003440213238IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEYFSGDYAE FSSPDNLNFN TNNNGVHFTV DDLLDFSKED ETMTDAFFDS LGGNSGDSST  60
VTAVDSCNSS ISGGGDGQFN GNVSCRSFND SQFSGNELCV PYDDLAELEW LSNFVEESFS  120
TDDLHFIPTA NGAVAAKTSA TDTSSSVTTT HSPPIFPSDV SVPGKARSKR SRAAPCDWSS  180
RLLLLSNSPS TNPKTAPSKL KREATETTPG RKCLHCASEK TPQWRTGPMG PKTLCNACGV  240
RYKSGRLVPE YRPAAPPAAS PTFVSTKHSN SHRKVLELRR QKDLQRQHHH QQLISQASIF  300
NGCDEFLIHH RSSSSINGPD LRHMI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011072418.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072418.10.0GATA transcription factor 12-like
SwissprotO826323e-77GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A4D8YRS51e-171A0A4D8YRS5_SALSN; Uncharacterized protein
STRINGMigut.I00908.1.p1e-160(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19192363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.13e-72GATA transcription factor 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]