PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011072178.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GRAS
Protein Properties Length: 672aa    MW: 74831.6 Da    PI: 6.3204
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011072178.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS426.81.7e-1302936611374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv+lL++cAe + s++ ++++++Larl elasp g+p++Rl+ayfte+La r+ar +++++++ +p+e ++   +++ +al+l+++vsPi+kf h
  XP_011072178.1 293 LVSLLVACAEQIGSKNIAAVNHCLARLGELASPLGSPLHRLVAYFTEGLALRVARLWPHIFHITTPRELDR-VDEDSGTALRLLNQVSPIPKFIH 386
                     689****************************************************************9984.566777999************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +t N+ +l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasR+++p ++RiTg+g+    sk+el etg+rLa fAe+l++pfef++ v++rled++
  XP_011072178.1 387 FTSNEILLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRTNPPSHVRITGIGE----SKQELIETGDRLAGFAEALNLPFEFHP-VVDRLEDVR 476
                     ******************************************************....***************************.7******** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     l++L+vk++E+++Vn+v+qlh++l +s+  +    ++L l++s++++ +v++eqea+hn+ s  +r++++l+yysa+fds++++lp +s  rik+
  XP_011072178.1 477 LWMLHVKEKETVVVNCVFQLHKMLYDSTGGTI--MDFLGLIRSTNAEAIVMAEQEASHNEISVDARLSNSLKYYSAVFDSVDSSLPLDSPVRIKI 569
                     ************************88777666..89*********************************************************** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee....sgslvlgWkdrpLvsvSaWr 374
                     E++ ++rei+n++aceg++r erhet+ekW++ +e+ GF+ + +s+++  q +++l++++ + yrv+++     +sl+l W d+pL++vSaW+
  XP_011072178.1 570 EEM-FAREIRNIIACEGRDRYERHETFEKWQQLMEQGGFRCMGISDRELLQGQMMLKMYSCESYRVDKReqngAASLTLSWLDQPLYTVSAWT 661
                     ***.********************************************************999****76555566888**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.749267637IPR005202Transcription factor GRAS
PfamPF035145.8E-128293661IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MLAGCSSTLL SPRHRLRSET SAQFQACHIP TMSTQRLDLP CSFARKDASR SQPVRPVGLS  60
IEKPIEAKSS GCSLRQNIKL PPVATEGRRE KKDEFWEKSK SIKKRYAGEV SYDHEESYTS  120
RVKRKRGNGK SDGSPVEEGH LSLGQFSSDN FWFHPGFNVP RSVPQVTGLN TTQVPFSLSC  180
SGEEERVCFV PSDVVAPPLP PLSNIPWFDS VVTEITDLGD KNVETIKGPE KEASGSSSTS  240
SGSQRLVLGL GGNPVEHEIG NGSSPRNPSE STEVIVARHN GENNHLEHDC LELVSLLVAC  300
AEQIGSKNIA AVNHCLARLG ELASPLGSPL HRLVAYFTEG LALRVARLWP HIFHITTPRE  360
LDRVDEDSGT ALRLLNQVSP IPKFIHFTSN EILLRAFEGK DRVHIIDFDI KQGLQWPSLF  420
QSLASRTNPP SHVRITGIGE SKQELIETGD RLAGFAEALN LPFEFHPVVD RLEDVRLWML  480
HVKEKETVVV NCVFQLHKML YDSTGGTIMD FLGLIRSTNA EAIVMAEQEA SHNEISVDAR  540
LSNSLKYYSA VFDSVDSSLP LDSPVRIKIE EMFAREIRNI IACEGRDRYE RHETFEKWQQ  600
LMEQGGFRCM GISDRELLQG QMMLKMYSCE SYRVDKREQN GAASLTLSWL DQPLYTVSAW  660
TPVDIAGGSQ PS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-6830066225379Protein SCARECROW
5b3h_D2e-6830066225379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011072178.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072178.10.0scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A2G9H0900.0A0A2G9H090_9LAMI; Uncharacterized protein
STRINGEOY246320.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55682434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein