PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011072131.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ERF
Protein Properties Length: 233aa    MW: 25670.9 Da    PI: 6.4016
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011072131.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.35.7e-1673121255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+G+r  +++g+Wv+eIr+p++   ++r++lg++ ++e+Aa+a++ a+++l+g
  XP_011072131.1  73 IYRGIR--SRSGKWVSEIREPRK---TTRIWLGTYPSPEMAAAAYDVAALALKG 121
                     69***6..678*********843...5************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.34E-1772131No hitNo description
PfamPF008471.5E-972121IPR001471AP2/ERF domain
PROSITE profilePS5103220.29773129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-2673130IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-1873131IPR016177DNA-binding domain
SMARTSM003803.8E-2973135IPR001471AP2/ERF domain
PRINTSPR003676.5E-77485IPR001471AP2/ERF domain
PRINTSPR003676.5E-7111131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MYLYMADSPH SMHKPFTTFP PPPPPHAASP EDQCPHVQTS VKRAKKVNRS SKISPAISTG  60
GSTSRPTTGK HPIYRGIRSR SGKWVSEIRE PRKTTRIWLG TYPSPEMAAA AYDVAALALK  120
GSDAVLNFPD HVGSYPVPSS PSPLDIRRAA AGAAELMRDE DGRDYRKDET VGNAESMISG  180
DDEFIDEEAL FHMPNLLMDM AEGMLLSPPR MGSPPPWDES PANFDGERLW SYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-1469134368ATERF1
3gcc_A7e-1469134368ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011072131.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072131.11e-171ethylene-responsive transcription factor ERF027
SwissprotQ9FJ901e-51ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A2G9G8191e-71A0A2G9G819_9LAMI; Uncharacterized protein
STRINGMigut.A00921.1.p1e-65(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.11e-48ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]