PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011072039.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 717aa MW: 79142.9 Da PI: 6.7614 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59 | 7.7e-19 | 27 | 82 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q+++Le++F+++++p++++r L+++l L rq+k+WFqNrR+++k XP_011072039.1 27 KKRYHRHTAHQIQRLEAMFKECPHPDEKTRNLLSRELALHPRQIKFWFQNRRTQMK 82 678899***********************************************998 PP | |||||||
2 | START | 168.8 | 3.7e-53 | 226 | 450 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 +a a++el+++ +++ep+W+ks+ e++n + + ++f++ ++ + ea+r+sgvv+ lve +ld + +W e ++ +a t+ XP_011072039.1 226 IAANAMDELIRLLQSNEPLWMKSAgdgrEILNLESYDRIFPRPNShlknpsIRNEASRDSGVVIIHGLGLVEMFLDAS-KWVEFFPtivaRARTV 319 67889***********************************9988899*999999************************.******99999***** PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170 evissg g+lqlm+ elq+ls lvp R +f+R+++q ++g+w+ivdvS d + + + ss +a++lpSg+li++++ng+skvtwveh+ XP_011072039.1 320 EVISSGvlgsqsGTLQLMYEELQVLSALVPtRQLYFLRFCQQIEQGSWAIVDVSYDIPHQGSHFSSPCKAHRLPSGCLIQEMPNGYSKVTWVEHW 414 *************************************************************9988889*************************** PP E--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 171 dlkgrlp.hwllrslvksglaegaktwvatlqrqce 205 +++++ p h l+r l++sgla+ga +w++tlqr e XP_011072039.1 415 EVEDKAPiHRLYRDLIHSGLAFGAERWLSTLQRMSE 450 ********************************9877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.01E-19 | 11 | 84 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-21 | 13 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.795 | 24 | 84 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.2E-17 | 25 | 88 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.86E-17 | 26 | 85 | No hit | No description |
Pfam | PF00046 | 2.2E-16 | 27 | 82 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 59 | 82 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 47.342 | 216 | 454 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.07E-32 | 217 | 452 | No hit | No description |
CDD | cd08875 | 6.92E-116 | 220 | 450 | No hit | No description |
SMART | SM00234 | 2.0E-45 | 225 | 451 | IPR002913 | START domain |
Pfam | PF01852 | 3.5E-44 | 226 | 450 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.0E-5 | 321 | 444 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.69E-21 | 473 | 709 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009828 | Biological Process | plant-type cell wall loosening | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 717 aa Download sequence Send to blast |
MMEFSSGGGG GSSGGDHQDA SDPHRRKKRY HRHTAHQIQR LEAMFKECPH PDEKTRNLLS 60 RELALHPRQI KFWFQNRRTQ MKAQHERADN CALRAENDKI RCENIAIREA LKNVICPSCG 120 GPPVSEDSYF DEQKLRMENA QLKEELDRVS SIAAKYIGRP ISQLPPVQPI HVSSLDLSMA 180 SFGGHGIPGP SLDLDLLPGS STSVIPNLAF PSMSISDMDK SLMADIAANA MDELIRLLQS 240 NEPLWMKSAG DGREILNLES YDRIFPRPNS HLKNPSIRNE ASRDSGVVII HGLGLVEMFL 300 DASKWVEFFP TIVARARTVE VISSGVLGSQ SGTLQLMYEE LQVLSALVPT RQLYFLRFCQ 360 QIEQGSWAIV DVSYDIPHQG SHFSSPCKAH RLPSGCLIQE MPNGYSKVTW VEHWEVEDKA 420 PIHRLYRDLI HSGLAFGAER WLSTLQRMSE RFACLIVTAN STRDLGGVIP SLEGKRSMMK 480 LAQRMVNNFC SSINPASGQQ WTTLSGLNEF EVRATVHRII DPGQPNGVVL SAAATIWLPV 540 PPQNVFNFFK DERSRPQWDV LSNQNPVQEV AHIANGSHPG NCISVLRALN TSQNNMLILQ 600 ESCIDSSGSL VVYCPIDLPA INIAMSGEDP SYIPLLPSGF TITSDGRADH LQASGGDGAS 660 TSSNLDRSSG SLITVVFQIL VSNLPTARMS PESITTVNNL ISNTIHQIKS ALNCATS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00232 | DAP | Transfer from AT1G73360 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011072039.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011072039.1 | 0.0 | homeobox-leucine zipper protein HDG11 | ||||
Swissprot | Q9FX31 | 0.0 | HDG11_ARATH; Homeobox-leucine zipper protein HDG11 | ||||
TrEMBL | A0A2G9HPI8 | 0.0 | A0A2G9HPI8_9LAMI; Uncharacterized protein | ||||
STRING | Migut.O00242.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2490 | 23 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |