PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_011072029.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 324aa MW: 37298.2 Da PI: 7.1138 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.4 | 1.5e-17 | 4 | 49 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+++G ++W++Ia++++ gR++k+c++rw++ XP_011072029.1 4 RGHWRPAEDEKLRELVERYGAHNWNAIAEKLQ-GRSGKSCRLRWFNQ 49 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 52.5 | 1.1e-16 | 56 | 99 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+++l+ ++ +G++ W+ Iar ++ gRt++ +k++w+ XP_011072029.1 56 RSPFTPEEEDRLLASHRIHGNR-WAIIARLFP-GRTDNAVKNHWHV 99 789*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.607 | 1 | 50 | IPR017930 | Myb domain |
SMART | SM00717 | 5.7E-15 | 3 | 52 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.16E-29 | 4 | 97 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.3E-17 | 4 | 49 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-27 | 5 | 57 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.07E-13 | 7 | 48 | No hit | No description |
PROSITE profile | PS51294 | 25.68 | 51 | 105 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-14 | 55 | 103 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-13 | 56 | 98 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.1E-21 | 58 | 104 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.09E-10 | 58 | 98 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 324 aa Download sequence Send to blast |
MCSRGHWRPA EDEKLRELVE RYGAHNWNAI AEKLQGRSGK SCRLRWFNQL DPRINRSPFT 60 PEEEDRLLAS HRIHGNRWAI IARLFPGRTD NAVKNHWHVI MARKCRQTSK LYATKSLSAS 120 TNNSNTWTHN HPHPHPPLLF ITNYCHTNNN NMEQEQEQES SSSSKPPHHL AVCSGGDHQN 180 LSFTPPHHLI NLDKFKSSCD QIRFDESSCG LISYNFQLPP WKQVQSADKP VLHRMIKSID 240 DEESRSKGGN VEFYDFLQVN KESITTTSEV TDLQQLHATK LHHKDDDDDD DEKAAEISSN 300 SQHHHHHHHL PFIDFLSVEG AASS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-32 | 4 | 105 | 7 | 108 | B-MYB |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_011072029.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ075662 | 5e-91 | KJ075662.1 Sesamum indicum clone TilSSR_46863 microsatellite Sesame_46863 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011072029.1 | 0.0 | transcription factor MYB56-like |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1784 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G17950.1 | 1e-69 | myb domain protein 52 |