PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011072025.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | HB-other | ||||||||
Protein Properties | Length: 125aa MW: 14659.8 Da PI: 9.2177 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 31.5 | 3e-10 | 7 | 57 | 6 | 56 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +f+++ +e Le +F+++ ++++e++ eL + +gL+ +q++ WF +Ra ++ XP_011072025.1 7 RFSSSMIESLELAFKESEHLTKEKKIELVRVTGLDMEQITSWFNRKRACKR 57 6999***************************************99998655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 1.8E-4 | 1 | 62 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.16E-6 | 6 | 59 | No hit | No description |
PROSITE profile | PS50071 | 11.969 | 6 | 59 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.0E-7 | 7 | 57 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-11 | 7 | 63 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.67E-9 | 7 | 61 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MIDSVSRFSS SMIESLELAF KESEHLTKEK KIELVRVTGL DMEQITSWFN RKRACKRSRE 60 SKGELEQINA ELKQSVHELH NRKAKLQMEF KESKRREAEL EAENELLKHR LKILGGDSVF 120 DSVIR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011072025.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022854043.1 | 8e-41 | uncharacterized protein LOC111375448 | ||||
TrEMBL | A0A2G9I6Z9 | 3e-41 | A0A2G9I6Z9_9LAMI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15650 | 4 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 4e-07 | homeobox 7 |