PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011071911.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 349aa    MW: 39785.4 Da    PI: 5.4764
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011071911.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding538e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l+++++++G g+W+++++  g+ R++k+c++rw +yl
   XP_011071911.1 14 KGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP

2Myb_DNA-binding46.31e-1467110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +++eE++ ++ +++ lG++ W+ Ia+ ++ gRt++++k++w++
   XP_011071911.1  67 RGMFSQEEEDMIITLHEALGNR-WAQIAAQLP-GRTDNEIKNFWNS 110
                      788*******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.8E-25664IPR009057Homeodomain-like
PROSITE profilePS5129417.981961IPR017930Myb domain
SuperFamilySSF466892.66E-2912108IPR009057Homeodomain-like
SMARTSM007174.7E-121363IPR001005SANT/Myb domain
PfamPF002499.7E-151461IPR001005SANT/Myb domain
CDDcd001671.31E-101761No hitNo description
PROSITE profilePS5129424.32962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-2665117IPR009057Homeodomain-like
SMARTSM007176.0E-1466114IPR001005SANT/Myb domain
PfamPF002491.1E-1367111IPR001005SANT/Myb domain
CDDcd001672.39E-1070109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGRNSCCVKQ KLRKGLWSPE EDEKLYNYIT RFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQEEEDMIIT LHEALGNRWA QIAAQLPGRT DNEIKNFWNS CLKKKLIKQG  120
IDPNTHRPIN EAQLKDEKDC ADSASLQILQ PRGLPNLAPS TRKEQEPYQL NGILCIDRDN  180
FTSKQAYDPL FLSEFQANVD ADGYQSNFLS HCQLRPYEQN QIEGNPINPS CGFNSMPNLT  240
SFDHQNMIDG EYSDNSASRM SKYLMNEAKE SSSNSNNNVI DNAGTFSWDA GNKLDSMFQF  300
QFSGIQIEER KPSPWQELHN QSSGDYSNYP LTALSQELSG TTLDVFQQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-28121165108B-MYB
1h8a_C9e-281211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011071911.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071911.10.0transcription factor MYB86
TrEMBLA0A438KB091e-163A0A438KB09_VITVI; Transcription factor MYB86
STRINGcassava4.1_033233m1e-158(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.12e-80myb domain protein 86