PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011071694.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

M-type_MADS

Protein Properties

Length: 365aa MW: 41958.6 Da PI: 6.5091

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011071694.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	65.3	6.3e-21	18	61	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 r e+ s rqvt+ kRr+gilKKA+E+SvLCd+++ +++fs+tgk XP_011071694.1 18 RLESLSSRQVTYGKRRAGILKKAQEISVLCDIDIILLMFSPTGK 61 678999************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	5.9E-28	9	68	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	23.619	9	69	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.31E-24	10	103	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.2E-17	11	31	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.3E-17	20	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.2E-17	31	46	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.2E-17	46	67	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MSFDCICRMG RVKLKIQRLE SLSSRQVTYG KRRAGILKKA QEISVLCDID IILLMFSPTG 60 KPSIFRGQRS NLDEMIAKYA QLTPKERAKR RLESLETLKR NFKKLDQDVD IEEFLDTSTP 120 STEEMHSRVN MMQAQLSEVR KRLSWWTNPD KIEDIEHLNQ MENSLRESLN RTHMHKQEKF 180 LKDPLISFDC TSQFQNGMHL PIVTTSDQDC QTQSWLPGGE SQHMILPNEP HFLASRDIDC 240 SRDASFPTCS GYFGDMKEQD LDNPRQMKNE RQGGISVEDY ACSAPLRLPL VEQYPYHSFA 300 NLSFPDLLEP GRETNFQPST MDYQITGNFE LPRSVYNSLP HSLVPTVGSC VISMLNGHSY 360 PQPPN

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MSFDCICRMG RVKLKIQRLE SLSSRQVTYG KRRAGILKKA QEISVLCDID IILLMFSPTG  60
KPSIFRGQRS NLDEMIAKYA QLTPKERAKR RLESLETLKR NFKKLDQDVD IEEFLDTSTP  120
STEEMHSRVN MMQAQLSEVR KRLSWWTNPD KIEDIEHLNQ MENSLRESLN RTHMHKQEKF  180
LKDPLISFDC TSQFQNGMHL PIVTTSDQDC QTQSWLPGGE SQHMILPNEP HFLASRDIDC  240
SRDASFPTCS GYFGDMKEQD LDNPRQMKNE RQGGISVEDY ACSAPLRLPL VEQYPYHSFA  300
NLSFPDLLEP GRETNFQPST MDYQITGNFE LPRSVYNSLP HSLVPTVGSC VISMLNGHSY  360
PQPPN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	1e-14	9	100	1	90	MEF2 CHIMERA
6byy_B	1e-14	9	100	1	90	MEF2 CHIMERA
6byy_C	1e-14	9	100	1	90	MEF2 CHIMERA
6byy_D	1e-14	9	100	1	90	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011071694.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071694.1	0.0	agamous-like MADS-box protein AGL65 isoform X1
Swissprot	Q7X9I0	1e-79	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	A0A022R5G8	0.0	A0A022R5G8_ERYGU; Uncharacterized protein
STRING	Migut.I00190.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7640	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	4e-82	AGAMOUS-like 65

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]