PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011071652.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 344aa    MW: 38476.7 Da    PI: 4.7249
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011071652.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.7e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+l++++k  G g+W++ ++  g+ R++k+c++rw +yl
   XP_011071652.1 14 KGKWTAEEDEKLINYIKANGDGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding58.21.9e-1867112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E+e +v+++k lG++ W++Ia++++ gRt++++k++w+++l
   XP_011071652.1  67 RGNFTADEEETIVKLHKSLGNR-WSLIASYLP-GRTDNEIKNYWNSHL 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-22564IPR009057Homeodomain-like
PROSITE profilePS5129417.312961IPR017930Myb domain
SuperFamilySSF466895.5E-2911108IPR009057Homeodomain-like
SMARTSM007171.9E-121363IPR001005SANT/Myb domain
PfamPF002493.4E-151461IPR001005SANT/Myb domain
CDDcd001671.96E-91661No hitNo description
PROSITE profilePS5129426.67162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.2E-2665116IPR009057Homeodomain-like
SMARTSM007173.2E-1766114IPR001005SANT/Myb domain
PfamPF002492.5E-1667112IPR001005SANT/Myb domain
CDDcd001671.07E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051555Biological Processflavonol biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGKTPCCEKV GLKKGKWTAE EDEKLINYIK ANGDGSWRSL PKNAGLLRCG KSCRLRWINY  60
LREDVKRGNF TADEEETIVK LHKSLGNRWS LIASYLPGRT DNEIKNYWNS HLSRKIYRFR  120
SIGESILTSA DIIKMASTGN KRAGRVSRAV AKKYNNNSST TASRTGNSEN SFTCMVNEQA  180
TAQETSSSDN LPVPSVGAAR MAGENDLDPL DRCESYEQKS ANVDGLSCAE GRPGAFMASA  240
NEVGAEEMLG PWKEVDEDIL MHLKDFLAET DQSENILINE GRQDVLMNTE RDCGGWSSNS  300
ETQDLYPCSS PVASYFNDEV VWDHEDAGEE ILNLWNAEDI WNWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26121165108B-MYB
1h8a_C2e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00598PBMTransfer from AT5G49330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011071652.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT2244538e-44KT224453.1 Erythranthe lewisii light areas 1 (LAR1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071652.10.0transcription factor MYB14
TrEMBLA0A2G9GJ781e-145A0A2G9GJ78_9LAMI; Transcription factor, Myb superfamily
STRINGMigut.N00057.1.p1e-101(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.13e-72myb domain protein 111