PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011071651.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | GRAS | ||||||||
Protein Properties | Length: 493aa MW: 55739.7 Da PI: 6.2018 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 251.3 | 3.8e-77 | 120 | 484 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 ++ Ll++Ae ++++++ +a++lL r l+s++++p++R++++f+eAL++r+ + ++ + + + ++ + a+ ++ + P +++++ XP_011071651.1 120 TSYLLNAAEKFANQQFDCAEKLLRRCILLSSNADSPVERVVKFFAEALRERVDIERGKIDLHKNIFHLE-DTLFDYHPAVLALEQKLPSAQVTQF 213 5789***********************************************998555555444555554.456777778888************* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190 ta qa+l+ v ++++H +Df+i+ Gl+W ++q La+R+ + l+iT+vg sk +leetg+rL++fAe+++++f +++ v+++++ l+ XP_011071651.1 214 TAIQAVLDGVGMARKIHLVDFGIKTGLHWSIMMQGLANREnCQLELLKITAVGT----SKVRLEETGRRLSSFAESMNLSFLYKT-VVSETKGLK 303 ****************************************445669********....9**************************.7999***** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285 ++++++p+E++aV + l l + l +++ +e+L++vk+lsP v+vv e ea++n++ F +rf al++ a fd+l++ l ++ r+ + XP_011071651.1 304 KDSFEFDPDEVVAVYSGLCLWSQLV----WPNQLKEFLQFVKNLSPCVIVVNEIEASTNTSIFIDRFHGALSFTIATFDCLDTCLKGKTIYRKII 394 ******************9988884....4445566*********************************************************** PP GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 E ++++ i+n++++e +er+ rh + Wre + e+ v+ls+++ qa+ll++ + +d +++ + + +v+gWk+ pL s+SaW+ XP_011071651.1 395 EDVFFRAMIRNIITAEDEERIYRHAKICFWRELFAEFNIVGVELSDSILYQARLLIKGNAaWDSCTLDVNGNYMVMGWKGTPLQSISAWK 484 ************************************************************9999*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 35.405 | 93 | 463 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.3E-74 | 120 | 484 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 493 aa Download sequence Send to blast |
MASQCEETKT ETDNGSPSVV SHHAGAKNEV PWTPQPPFEI LNKYASHIKR FRCGKIISPA 60 PETTVGRFPG QELSADSILA LAKMRLLQHT SQSTGDSNSG YPINYDPDLS SENYKDVELT 120 SYLLNAAEKF ANQQFDCAEK LLRRCILLSS NADSPVERVV KFFAEALRER VDIERGKIDL 180 HKNIFHLEDT LFDYHPAVLA LEQKLPSAQV TQFTAIQAVL DGVGMARKIH LVDFGIKTGL 240 HWSIMMQGLA NRENCQLELL KITAVGTSKV RLEETGRRLS SFAESMNLSF LYKTVVSETK 300 GLKKDSFEFD PDEVVAVYSG LCLWSQLVWP NQLKEFLQFV KNLSPCVIVV NEIEASTNTS 360 IFIDRFHGAL SFTIATFDCL DTCLKGKTIY RKIIEDVFFR AMIRNIITAE DEERIYRHAK 420 ICFWRELFAE FNIVGVELSD SILYQARLLI KGNAAWDSCT LDVNGNYMVM GWKGTPLQSI 480 SAWKIHEQNN QHD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 9e-38 | 149 | 484 | 33 | 375 | GRAS family transcription factor containing protein, expressed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011071651.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011071651.1 | 0.0 | DELLA protein RGL1-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8500 | 17 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 3e-46 | RGA-like 1 |