PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_011071504.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 786aa MW: 87802.6 Da PI: 7.025 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 115.3 | 3.3e-36 | 134 | 210 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv+gCe+d+se+k yh+rh+vC +++a++v ++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k XP_011071504.1 134 RCQVPGCEVDISELKGYHKRHRVCLRCANASAVELDGESKRYCQQCGKFHILSDFDEGKRSCRRKLERHNNRRRRKP 210 6***********************************************************************99975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 8.1E-28 | 129 | 196 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 29.453 | 132 | 209 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.7E-33 | 133 | 212 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.9E-27 | 135 | 209 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0055070 | Biological Process | copper ion homeostasis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 786 aa Download sequence Send to blast |
MQQNPPQPPG IEPRVPGVPS AADRIPADDL TSSSLFNWSD FLDFNLDENL HISFPQTEPE 60 QPGIEESQPS ENSGLEKPGR VRKRDPRLVC SNFLAGRVPC ACPELDEKLE EEESALPGKK 120 RSRMLRASGG APARCQVPGC EVDISELKGY HKRHRVCLRC ANASAVELDG ESKRYCQQCG 180 KFHILSDFDE GKRSCRRKLE RHNNRRRRKP NDSKEGMQKE SQQAILVDDV SGDDDTGKDG 240 LCVSSQLEEK EMLLESDGHV STLCSALGSH SLQSDSVVSF PAFDEAHIVG DRQNPRYKHS 300 PSNCENKSTF SSVCPAGRIS FKLYDWNPAE FPRRLRHQIF QWLASMPIEL EGYIRPGCTI 360 LTAFIAMPKP VWLKLLAEPA LCIKDLVASP GSMLSGRGTM HVYLNDMMFR VSKDASSVVK 420 VKMKDRAPKL HYIYPTCFEA GRPMELVACG SYLLQPNFRF LISFAGRYLA YNICVSSCYE 480 KGDVNSSDHQ LLKIFVPQIN MDLFGPAFIE VENQSGLSNF IPILVGDKDT CAEMEMLQHK 540 FDAPVSSQER KSSPSPTACE AFASRQTLLS EFVLDVAWLL KKPVPEQQLT SSHIQRFNCL 600 LNFLIEKESS VVLERVFFSL KSAIDNNMVT GTSDSDMRLL QKNMDIAQHR LAHKLMVKDI 660 SVIPAGHGNF YSHSCQNDTV SVIPAANQVV QRMVKNMLGL NVPSPSLDES LTLPLLKQEV 720 IMDVNHQETL GKSSSRLLTR MFSTSRLLIM AIAAIGVCFG ICSIVLHPQR VDLIVTTIQR 780 CLFDNT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul5_A | 1e-42 | 130 | 213 | 1 | 84 | squamosa promoter binding protein-like 7 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 195 | 207 | RRKLERHNNRRRR |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00604 | PBM | Transfer from AT5G18830 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_011071504.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011071504.1 | 0.0 | squamosa promoter-binding-like protein 7 | ||||
TrEMBL | A0A2G9GNS4 | 0.0 | A0A2G9GNS4_9LAMI; Uncharacterized protein | ||||
STRING | Migut.N00133.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5407 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G18830.1 | 0.0 | squamosa promoter binding protein-like 7 |