PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011071462.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB_related | ||||||||
Protein Properties | Length: 1152aa MW: 128047 Da PI: 8.91 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.9 | 1.3e-09 | 44 | 79 | 3 | 40 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 rWT eE +++da +++G++ Wk++a + +R+++++ XP_011071462.1 44 RWTMEELARFYDAYRKYGKD-WKKVAGAVR-NRSAEMV 79 9*****************99.*********.***9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.05E-9 | 40 | 88 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0011 | 41 | 89 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-7 | 44 | 80 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.8E-5 | 44 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.30E-5 | 44 | 79 | No hit | No description |
Pfam | PF06584 | 9.7E-33 | 648 | 748 | IPR033471 | DIRP domain |
SMART | SM01135 | 2.6E-57 | 648 | 749 | IPR033471 | DIRP domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1152 aa Download sequence Send to blast |
MGPARKSRSL SKRHVSEVSP SKDGDGAKRS NIRKRKLSDM LGPRWTMEEL ARFYDAYRKY 60 GKDWKKVAGA VRNRSAEMVE ALYMMNRAYL SLPHGTASAA GLIAMMTDHY SNLAGSDSDQ 120 ESNDGAGSSR KTQKRARGKV QPTTSKATDE QLVSHSQSVA SNYGCLSLLK KKRSGGSRPC 180 PVGKRTPRFP VSFSYENING EGYVSPTRQG MKLKASGNDD EVAHEIAIAL AEASQKGGSP 240 QVSRTPGRRA ESVTSSPFRN AQRKHSLVEM PNTKILDADM DEEDLEGSTE GDIGELSGCN 300 PSMKDSISTG AVRKKVRKLE GKKFDVDNNS ENHLDDIKEE CSGTEEGQRF SATQGKLDAE 360 VTNTQISRSF MQNQGKKSKK VLFRRDEAPA FEALQTLADL SLMMPTENED DPILQFKDED 420 EDCPNELVSS ENLPLNLQKE KRRNLGVKMK GHQPISSCEV ASSKTSKPGK APVLEVSSIP 480 EENQDPHQSI SKTTRKKQKM QMPKIRKTEA HSDIHLSESP GVEAGDAGKK LMINSKKSSQ 540 SGSPNLMKNS ENSSTVDLRK EASDSAQSAV RLPVVNQVNL PTKVRSRRKM HLKKPQAQKD 600 LKFLDKISDD HSNPPFSSLH DRAFNLKKKL SNCLWNPHLR RWCTYEWFYS AIDYPWFAKR 660 EFVEYLYHVG LGHVPRLTRV EWGVIRSSLG KPRRFSEQFL KEEKEKLNQY RDSVRKHYTE 720 LREGVREGLP TDLARPLSVG QRVIAIHPKT REVHDGSVLT VDHSRCRVQF DRHELGVEFV 780 MDIDCMPLNP FENMPALLGA QPIAVDKFFE NFNELKINGR AQDFMKLYSG DNVDNADGIS 840 DLSPLANRAS SSNLTKVASA NNNMQTRIGS AETAGYQQTS YSQPATLAQI QAKEADVQAL 900 AELTRALDKK EAIVLELRQM NNDVLETQKD GGSSLKDSEP FKKQYAAVLV QLNEANEQVS 960 SALYCLRQRN TYQGNTPLAW PRPGTNLADS GGELSSFDRS ACQNHDSGSH ANEIIDSSRT 1020 KAQAMVDAAV QAMSSLKSRE HTIEKIEEAI DYVNDQLPSD DSSTAVVPDP KPTTPSNIKS 1080 HIPSELISKC VATLLMIQKC TERQFPPSDV AQILDSAVTS LQPRSPQNLA VYTEIQKCMG 1140 IIRNQIMALI PT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011071462.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011071459.1 | 0.0 | protein ALWAYS EARLY 3 | ||||
TrEMBL | A0A4D8YXC6 | 0.0 | A0A4D8YXC6_SALSN; Uncharacterized protein | ||||
STRING | Migut.N00106.1.p | 0.0 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 0.0 | DNA binding |