PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011071399.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | ARR-B | ||||||||
Protein Properties | Length: 670aa MW: 73590.8 Da PI: 6.146 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 91.5 | 7.1e-29 | 213 | 266 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl XP_011071399.1 213 KPRVVWSVELHQQFVTAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 266 79*******************.********************************8 PP | |||||||
2 | Response_reg | 74.8 | 3.3e-25 | 33 | 141 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+vdD+p+ +++l+++l++ y ev+ ++ +e al+ll++++ +D+++ D+ mp+mdG++ll++ e +lp+i+++a ++++ + + + G XP_011071399.1 33 VLVVDDDPTCLRILEKMLRSCLY-EVTKCSRAEVALKLLRDNKdgFDIVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADDSKNVVMKGVTHG 125 89*********************.***************888889**********************6644.8********************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l Kp+ +e+l + XP_011071399.1 126 ACDYLIKPVRMEALKN 141 ***********99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 9.8E-185 | 12 | 649 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 4.6E-42 | 30 | 175 | No hit | No description |
SuperFamily | SSF52172 | 6.12E-35 | 30 | 154 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 9.1E-30 | 31 | 143 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 41.991 | 32 | 147 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 9.1E-23 | 33 | 141 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 4.15E-27 | 34 | 146 | No hit | No description |
SuperFamily | SSF46689 | 3.23E-20 | 210 | 270 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.611 | 210 | 269 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-30 | 212 | 271 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.3E-25 | 213 | 266 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.0E-7 | 215 | 265 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 670 aa Download sequence Send to blast |
MNLGVNPMSF TSSSASWKSG DGVSDQFPAG LRVLVVDDDP TCLRILEKML RSCLYEVTKC 60 SRAEVALKLL RDNKDGFDIV ISDVHMPDMD GFKLLEHVGL EMDLPVIMMS ADDSKNVVMK 120 GVTHGACDYL IKPVRMEALK NIWQHVVRKK KHEWREKDFE QSGSVEEGER QQKPSEDVDY 180 SSSANEGNWK SSKKRKDEED EAEERDDSST LKKPRVVWSV ELHQQFVTAV NQLGIDKAVP 240 KKILELMNVP GLTRENVASH LQKYRLYLRR LSGQHQNGLG NSFMGPSDAT FGPMTALNGL 300 DLQALASSGQ LPPQSLATIQ AAALGRATNK SAISVPMVDQ RNIFSFESPK IRFVDGQQQH 360 NNSTKQVNLL HGIPTNMDSK QLAALHQSAQ PFSNMNRHIH SQSSQSNSLL TQMVQPQSRT 420 QILNEVGGSH VLNLPSSVGQ PVLSQAIPGA LLGRNGIDNV HGPTYASVSQ PSAVVDFSRS 480 QRAELPGNSF SLVGNSGIPT LATKGMLQED FNSEMKGNRG FMPNYDVFNE LNQNRTEDWG 540 LQSVGSNFEA PQHTNLQGRL DVAPSVLVQP GFLSDRHIGI PSVNKTAFSA ADGVVNTANL 600 SQALTSSLPD NALRIKAERL PDMGFQNGPF PDQFGQDDLM SALLKQQQEG IVPAETDFGF 660 DGYHLDNLPV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 3e-21 | 212 | 272 | 4 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011071399.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011071399.1 | 0.0 | two-component response regulator ARR2 isoform X1 | ||||
Swissprot | Q9ZWJ9 | 0.0 | ARR2_ARATH; Two-component response regulator ARR2 | ||||
TrEMBL | A0A2G9GU31 | 0.0 | A0A2G9GU31_9LAMI; Two-component response regulator | ||||
STRING | EOY06639 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3191 | 24 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 0.0 | response regulator 2 |